Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   1.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   5.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.8  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 428 TIIVMYKPTETSTMILTILRNITDIFVFITL 520
           T+ ++Y P +TST+ L  LR  T +F  +TL
Sbjct: 245 TLAILYSPEQTSTVTLP-LRKDTVLFSLVTL 274


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -2

Query: 370 QRIKFSNVRISIE*AVQSTYSHKPNTGIPNIIHKTTDADRTIALSV 233
           +R++F   +   +  ++S++SH PNTG+   I  +   +  + L++
Sbjct: 769 RRVQFVKDKYLYKRFIKSSFSHDPNTGLLESIEHSNLKEAVLCLAL 814


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 332 FDRYTNIRKLNSLPSV 379
           FD   NIR LNSLPS+
Sbjct: 624 FDELENIRVLNSLPSL 639


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 VIDNSHRRPPPGKEIRGFVCKF 195
           V+DN++  PP  K+ RG++  F
Sbjct: 205 VVDNTNSNPPRCKKCRGYINPF 226


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 IINESDR*FTPTPPSRQRNTWLR 185
           IIN+  + F P+ P+  R  WLR
Sbjct: 338 IINKKHQGFIPSTPAEFRECWLR 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,181
Number of Sequences: 5004
Number of extensions: 42373
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)