Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009...    28   5.2  
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427...    27   6.9  
03_05_0119 + 21004987-21005020,21005970-21006107,21007039-210071...    27   9.1  

>03_06_0198 -
           32299480-32299643,32300084-32300126,32300843-32300929,
           32301063-32301098,32301187-32301295,32301408-32301499,
           32302029-32302115,32303887-32304222
          Length = 317

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 303 LCEYVDWTAYSIDIRTFENLILCL 374
           LC +V+W  Y +  R + +L  C+
Sbjct: 157 LCNFVEWKGYKVVYRRYASLYFCM 180


>07_03_1738 -
           29141829-29141989,29142112-29142343,29142751-29142792,
           29143312-29143410,29143575-29143667,29143742-29143876,
           29144251-29144290,29144475-29144844,29146575-29146650
          Length = 415

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 312 YVDWTAYSIDIRTFENLILCLQYLC 386
           Y +W  ++ D   + NL  C+ YLC
Sbjct: 230 YFEWFQFNKDFTEYTNLDECISYLC 254


>03_05_0119 +
           21004987-21005020,21005970-21006107,21007039-21007131,
           21009085-21009140,21009433-21009666
          Length = 184

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 PPGKEIRGFVCKFKILNPQ 213
           PPGKE+   +C  KI NP+
Sbjct: 53  PPGKEVIRLICTSKINNPR 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,835
Number of Sequences: 37544
Number of extensions: 241531
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)