Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)                  27   7.1  

>SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 516 VIKTKISVIFLNIVKIIVLVSVGLYITIIVL 424
           VI   I +IF+ IV +I+++ + + +T+I++
Sbjct: 119 VIVVVIIIIFIAIVVVIIIIFIVIIVTVIII 149


>SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)
          Length = 350

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 510 KTKISVIFLNIVKIIVLVSVGLYITIIVL*HSCYKIIYRLD 388
           K  I+++ + ++ +I  V  G+Y+T++     C K  Y  D
Sbjct: 227 KLAITLLIVTLLSLITWVPFGVYVTVLYYCMDCKKETYARD 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,275
Number of Sequences: 59808
Number of extensions: 299232
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)