Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine re...    29   2.0  
AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain (...    28   4.7  
Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein52 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 501 ISVIFLNIVKIIVLVSVGLYITIIVL*HSCYKIIYRLDDID 379
           I +IF  IV+I+ +  +G      +L HSCYKI++ L   D
Sbjct: 40  ILIIFGIIVEILYVPCLGAIYKKKLLQHSCYKIMFLLGITD 80


>AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 28 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 438 TIIVL*HSCYKIIYRLDDIDTEGKELSFRMFVYRSNKQSSPHTHTNQTLE 289
           T +V+  SC++ IY LDD     +E      ++ + + S   TH ++ +E
Sbjct: 3   TSLVILLSCFEFIYSLDDKTEAQREYEAGNALFVNRQYSDALTHYHKAIE 52


>Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical
           protein C48D1.1b protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 359 VFECSYIDR-ISSPVHILTQTKHWNTEYYS*NYRRRPNHRLKRNLN*PTC*GFNILNLQT 183
           V   +Y  + + + V+ LT  K +++ Y     R   +    +NLN P+C    + ++QT
Sbjct: 163 VLNTAYFHKSVQALVYCLTARKEFDSGYCMKAIRISISEDNLQNLNIPSCIKTIVKSMQT 222

Query: 182 KPRISLPGGGRRC 144
              IS+   G +C
Sbjct: 223 FDSISVTQNGLKC 235


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 359 VFECSYIDR-ISSPVHILTQTKHWNTEYYS*NYRRRPNHRLKRNLN*PTC*GFNILNLQT 183
           V   +Y  + + + V+ LT  K +++ Y     R   +    +NLN P+C    + ++QT
Sbjct: 298 VLNTAYFHKSVQALVYCLTARKEFDSGYCMKAIRISISEDNLQNLNIPSCIKTIVKSMQT 357

Query: 182 KPRISLPGGGRRC 144
              IS+   G +C
Sbjct: 358 FDSISVTQNGLKC 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,351
Number of Sequences: 27780
Number of extensions: 232139
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)