Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01220.2 68417.m00161 expressed protein                             32   0.27 
At4g01220.1 68417.m00160 expressed protein                             32   0.27 
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    28   3.3  
At2g42430.1 68415.m05250 LOB domain protein 16 / lateral organ b...    27   7.7  

>At4g01220.2 68417.m00161 expressed protein
          Length = 299

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 124 MKVIDNSHRRPPPGKEIRGFVCKFKI 201
           +K +D+SH  PPPGK+ R ++C   I
Sbjct: 219 IKPLDHSHDLPPPGKKGRTYICSCMI 244


>At4g01220.1 68417.m00160 expressed protein
          Length = 360

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 124 MKVIDNSHRRPPPGKEIRGFVCKFKI 201
           +K +D+SH  PPPGK+ R ++C   I
Sbjct: 219 IKPLDHSHDLPPPGKKGRTYICSCMI 244


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 219 RSVQVTLKAMVRSASVVL*IIFGIPVFG----LCEYVDWTAYSIDIRTFENLILCLQYL 383
           R +  +LK  + +  + + ++  +  FG    + +Y DW+A S+D+ +  NL +  Q+L
Sbjct: 13  RMITFSLKVFLFAGIIGVFVLLPVNCFGDQLTVIDYADWSANSLDLFSVANLKVRSQWL 71


>At2g42430.1 68415.m05250 LOB domain protein 16 / lateral organ
           boundaries domain protein 16 (LBD16) identical to LOB
           DOMAIN 16 [Arabidopsis thaliana] GI:17227162
          Length = 245

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 249 VRSASVVL*IIFGIPVFGLCEYVDWTAYSIDIRTFENLILCLQYLCRLDDK*SYSMNVIV 428
           V  AS V  ++  +P+   CE V   AY    R  + +  C+ ++  L  + ++  + ++
Sbjct: 51  VFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVM 110

Query: 429 Q 431
           Q
Sbjct: 111 Q 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,671
Number of Sequences: 28952
Number of extensions: 204827
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)