Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G01f
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   2.8  
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926...    26   8.7  

>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 47  PSQLVHGSRRVHRARRGCLHRSAG 118
           P  L+H SRR    + GC+H S G
Sbjct: 14  PPPLLHPSRRRRHRQGGCIHTSPG 37


>01_01_1165 -
           9267891-9268145,9268395-9268510,9268991-9269127,
           9269645-9269808,9269892-9269972,9270783-9270962,
           9271489-9271929,9273234-9273344,9274355-9274463,
           9274618-9274643,9274823-9274903,9275013-9275211,
           9275374-9275449,9275553-9275769,9276117-9276155,
           9276684-9276783,9276962-9277084,9277171-9277895
          Length = 1059

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 221 YVSTLSAEINKPIYLLPE*KKKKKNSRGGP 310
           Y++ LS +I+ P Y +P+   KK  S+G P
Sbjct: 570 YMTGLSLKISVPYYSVPQSHGKKYCSKGEP 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,916,582
Number of Sequences: 37544
Number of extensions: 67101
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)