Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G01f
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58450.1 68418.m07320 expressed protein predicted proteins fr...    26   7.4  
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    25   9.7  

>At5g58450.1 68418.m07320 expressed protein predicted proteins from
           D.melanogaster, C.elegans and S.pombe
          Length = 1065

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 266 LPE*KKKKKNSRGGPVPNSPYSES 337
           LP  KKKKKN     + +SP S++
Sbjct: 924 LPSGKKKKKNQHSDQLSSSPISQA 947


>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +2

Query: 209 FMRNYVSTLSAEINKPIYLLPE*KKKKKNSRGGP 310
           + R++++  +   + P+  LP+ +K+++ SRG P
Sbjct: 592 YERSFLNNSNLCADNPVLSLPDCRKQRRGSRGFP 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,386,885
Number of Sequences: 28952
Number of extensions: 49347
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)