Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 67 1e-12
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.32
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 0.73
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 1.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 1.7
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 2.2
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 26 3.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 3.9
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 3.9
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 3.9
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 3.9
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 5.2
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 25 5.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.2
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 5.2
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 6.8
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 6.8
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 9.0
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 67.3 bits (157), Expect = 1e-12
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 163 SNPKSYSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLR 342
SNP+ GIP A+F EF + ++ E L+ E KYK ME ++ + L
Sbjct: 4 SNPR---GIPPAQFF----EFKE--LSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLD 54
Query: 343 QQIPDLARTIEVIEKLKE-QKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSL 519
+IPD+ +T++ ++ LKE Q + + L+D + KA V +V LWLGANVMLEY++
Sbjct: 55 DKIPDIRKTLQSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTV 114
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 280 EKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQFLLSDQVFVKA 453
E++RKY + LA + + + P +A TI ++ LKE + EV ++D V A
Sbjct: 250 EEYRKYIEKDAALARRFQAVMVNEPSVADTISILRGLKE-RYEVHHGVRITDDALVTA 306
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.73
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Frame = -1
Query: 326 LVANVYSITLYLRCFS-SRLFKTTSTPSALIGDFINSSTLSTNSASG------IPEYDLG 168
LV + +I L L+ + S K++STPS D + + TL++ ASG + E +L
Sbjct: 183 LVRALQTIELLLKKYEVSNTTKSSSTPSPSTDDNVPTGTLNSLIASGRRVTAELYETELK 242
Query: 167 FEGSTPSPSIFIYCEVYIQFLENDS--KLI*NLNDILEF 57
+ S ++ Q L D+ + NLN+IL+F
Sbjct: 243 YIQDLEYLSNYMVILQQKQILSQDTILSIFTNLNEILDF 281
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 202 FVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDL-ARTIEV 378
+VD E + P + + + S+D + R+ E T+ T ++ ++IPD+ AR +
Sbjct: 133 WVDLDREDLAYPEIQQALQSISHSIDLQERERIEWENTIQTSSQQKYEEIPDIQARRLYF 192
Query: 379 IEKLKE 396
IE KE
Sbjct: 193 IEADKE 198
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 265 LKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEE 408
L+SL++K + Y++ ATK + L ++ + I+ + K E KEE
Sbjct: 1095 LESLNDKDQLYQLQ----ATKNKELEAKVKECLNNIKSLTKELENKEE 1138
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 310 YTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQ 420
+ L TK +P ++ + + E + EQKEE+E+Q
Sbjct: 1215 WNLLTKPSPRSASLPKNSQPLSISEIMTEQKEEIESQ 1251
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 157 EPSNPKSYSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVME 309
E PK Y G PE + E +K I + V + L K RK K++E
Sbjct: 58 EAYTPKKYKGFPEISSREEAIEVLKLLI-MNSMLVRVDKLPPKQRKQKLVE 107
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.0
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -1
Query: 425 RNCVSTSSFCSFNFSITSIVRAKSGICCRNRLLLVANVYSITLYLRCFSSRLFKTTSTPS 246
+N S SS +N + S + R L V N+ L+ S++ F+T
Sbjct: 55 KNDSSNSSTYRWNIDLLSSTATIDDSVAKRRKLAVQNL------LQYDSTQTFQTGDEID 108
Query: 245 ALIGDFINSSTLSTNSASGIPEYDLGFE 162
LIG + S+ L+ ++ I + DL +E
Sbjct: 109 ELIGKSVGSNVLNVLRSNPIYDDDLRYE 136
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 EAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPD----- 357
EA F + DE P E + ++ L+EK K T+ T + ++Q+I
Sbjct: 590 EAPF-EEPDEPAHEPTEEEQEE--MRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTRL 646
Query: 358 --LARTIEVIEKLKEQKEEVETQFLLSDQ 438
L ++ ++ +KE+ ++ +Q L++DQ
Sbjct: 647 MILREELQELDAIKEEAQKQISQSLIADQ 675
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 250 GVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQFLL 429
G +L ++E +KY V TLAT + P + I +E+LK+ VE +
Sbjct: 275 GYKAILSRVEELAKKYNVSMATLATAWSLHKGDYPIVG--ISKVERLKDALAAVELKLSE 332
Query: 430 SD 435
D
Sbjct: 333 ED 334
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 3.9
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +1
Query: 145 GDGVEPSNPKSYSGIPEAEFVDNVD----EFMKSPI-NAEGVDVVLKSLDEKHRKYKVME 309
GD + + S + E EFV+ + + KS I +E DV LK++ +K+
Sbjct: 22 GDSTDTESSFSDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKN------- 74
Query: 310 YTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVE 414
KR R + IP + E IEK + EVE
Sbjct: 75 -----KRERNDKLIPQQSNESEAIEKPVQSTTEVE 104
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 187 IPEAEFVDNVDEFMKSPINAEGVDVVLKSLDE 282
IP + + +VD+ +SP+ VDV K +DE
Sbjct: 320 IPSEQQIISVDKATESPVQEVAVDVNEKPVDE 351
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 382 EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLW 486
E+++ +E VE LLS + FVK + P K + L+
Sbjct: 186 EQIERLREVVELP-LLSPERFVKLGIDPPKGIMLY 219
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 412 ETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYS 516
E Q L + VK PP + +W+G +++ S
Sbjct: 316 EIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 506 NITLAPSHKHTDFVGGTLA 450
++ P+H+HT F G TL+
Sbjct: 287 SVVYEPNHRHTSFFGDTLS 305
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 205 VDNVDEFMKSPINAEG-VDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVI 381
+D++D K+ A+ ++ L S R +M T RRR Q + DL + ++I
Sbjct: 736 MDDLDVIFKAKPTADADIEQALLSKQRISRAKTMM--TPFVLRRRKNQVLNDLPKKTQII 793
Query: 382 EKLKEQKEEVE 414
E K + ++E
Sbjct: 794 EHCKLSENQLE 804
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 157 EPSNPKSYSGIPEAEF 204
EPSN K YS IP EF
Sbjct: 181 EPSNMKDYSEIPVEEF 196
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 382 EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLW 486
++ + KE+ + Q D +K +PP K V W
Sbjct: 39 DRFRGTKEDEKKQIADKDMAAMKVVIPPKKRVSKW 73
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +1
Query: 265 LKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEE 408
++ L E + K + +R + Q+ +++ ++ +EKL E+K+E
Sbjct: 171 IQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSLEKLCERKDE 218
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 302 TLYLRCFSSRLFKTT 258
TLY + FSS+LFK T
Sbjct: 428 TLYFKSFSSQLFKET 442
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 142 EGDGVEPSNPKSYSGIPEAEFVDNVD-EFMKSPINAEGVDVVLKSLDEKH 288
E + P+NPK +P + VD + SP +G V ++ KH
Sbjct: 527 EDSNISPTNPKKLHTLPRSPQYSTVDSNSVLSPAMPKGYMFVNENQSMKH 576
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 9.0
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -1
Query: 416 VSTSSFCSFNFSITSIVRAKSGICCRNRLLLVANVYSITLYLRCFSSRLFKTTSTPSALI 237
+ TSS F+ SIT+I S + V+++ S + +S ++ST S
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSST-- 602
Query: 236 GDFINSSTLSTNS-ASGIPEYDLGFEGSTPSPS 141
F ++ST S +S +S I TPS S
Sbjct: 603 --FSSASTSSPSSISSSISSSSTILSSPTPSTS 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,041
Number of Sequences: 5004
Number of extensions: 36633
Number of successful extensions: 147
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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