Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0782 + 23114532-23114596,23116259-23116316,23116445-231165... 72 3e-13
06_01_0050 - 444267-444914 31 0.56
04_04_0523 - 25900802-25902548,25902640-25903037 29 2.3
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 29 3.0
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 29 3.0
05_04_0384 - 20809397-20811547 29 3.0
02_05_0019 - 25025218-25026964,25027084-25027478 29 3.0
02_05_0016 - 25004075-25005821,25006394-25006527 29 3.0
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 4.0
04_03_0130 - 11622139-11623325,11626144-11627116 28 5.2
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 5.2
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.9
08_01_0270 - 2176687-2176918,2177133-2177395,2177503-2177581,217... 27 6.9
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 27 6.9
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 27 6.9
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 9.1
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 27 9.1
>12_02_0782 +
23114532-23114596,23116259-23116316,23116445-23116516,
23117468-23117587,23117668-23117769,23118254-23118274
Length = 145
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +1
Query: 280 EKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQK---EEVETQFLLSDQVFVK 450
++ ++YK++E L ++R L+ +IPD+ + ++++ L+ +K E + F LS+ ++ +
Sbjct: 21 QRLQQYKIVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKALGEALTADFELSEGIYSR 80
Query: 451 ANVPPTKSVCLWLGANVMLEYS 516
A + T SVCLWLGANVMLEYS
Sbjct: 81 AKIEDTDSVCLWLGANVMLEYS 102
>06_01_0050 - 444267-444914
Length = 215
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 VLKSLDEKHRKYKVMEYTLATK-RRRLRQQIPDLARTIEVIEKLKEQKEE 408
VLK +KH K ++ A K RRRL + + + A I +EK ++QK E
Sbjct: 12 VLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKRE 61
>04_04_0523 - 25900802-25902548,25902640-25903037
Length = 714
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 248 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 99
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 426 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLAN 472
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 210 IYKFSFWYSRIRLRVRGFYSVSFHF 136
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 532 VYLYSIYYYHVKTKMSGFFQTSFYF 556
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 210 IYKFSFWYSRIRLRVRGFYSVSFHF 136
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 527 VYLYSIYYYHVKTKMSGFFQTSFYF 551
>05_04_0384 - 20809397-20811547
Length = 716
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 248 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 99
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 428 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 474
>02_05_0019 - 25025218-25026964,25027084-25027478
Length = 713
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 248 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 99
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 425 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 471
>02_05_0016 - 25004075-25005821,25006394-25006527
Length = 626
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 248 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 99
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 338 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 384
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 210 IYKFSFWYSRIRLRVRGFYSVSFHF 136
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 524 VYLYSVYYYHVKTKMSGFFQTSFYF 548
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 506 NITLAPSHKHTDFVGGTLAFTNT*SLRRNCVSTSSFCSFNFSIT-SIVRAKSGI-CCRNR 333
N+ A + ++GG + SL CV+T + N ++T V A SGI CCR
Sbjct: 139 NVFTAIGCRTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGCCRTS 198
Query: 332 LLLVANVYSI 303
+ + Y +
Sbjct: 199 IPVGLQYYYV 208
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 331 RRLRQQIPDLARTIEVIEKLKEQKEEVETQFLLSDQVFVKANVPPTKS-VCLWLGANV 501
+RL+ +P L E+ E KEQ+ + ++ V + PTKS C LG N+
Sbjct: 371 KRLKVDVPHLVHVNEM-EASKEQQPAANETYASAETVQSEVTNSPTKSPCCTSLGDNI 427
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 307 EYTLATKRRRLRQQIPDLARTIEVIEKL 390
+++ AT RR + Q PDLART+ V KL
Sbjct: 213 DWSNATTRRVVMQVDPDLARTVLVSTKL 240
>08_01_0270 -
2176687-2176918,2177133-2177395,2177503-2177581,
2177938-2177942
Length = 192
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 358 LARTIEVIEKLKEQKEEVETQFLLSDQVFVKANVPPTKSV 477
+A+ E IEK E VE LSD V K P K V
Sbjct: 10 VAKLAEEIEKGASSVEGVEVPETLSDDVLTKMGAPSKKDV 49
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 329 LLVANVYSITLYLRCFSSRLFKTTSTPSALI 237
LL+AN Y + L+L C SS+ TT A +
Sbjct: 308 LLLANAYQVCLHLECDSSKDSDTTKKIGATL 338
>02_01_0033 +
202703-202705,203397-203458,203566-203665,203875-203916,
204264-204305,204437-204589,206559-207221
Length = 354
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 VLKSLDEKHRKYKVMEYTLATK-RRRLRQQIPDLARTIEVIEKLKEQKEE 408
VLK +K K ++ A K RRRL + + + A I +EK K++K E
Sbjct: 143 VLKKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKRE 192
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 136 KMEGDGVEPSNPKSYSGIPEAEFVDNVDEFMKSPINAE-GVDVVLKSLDEKHRKY 297
++E + V+PSNP + A D + + +KSP ++ + +L SL K+
Sbjct: 1945 QLENESVDPSNPLDLLELYSATLDDCLSDLIKSPSESQILLHKLLSSLSRSTEKH 1999
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 247 EGVDVVLKS-LDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQF 423
E DV K+ +E R+++ T+ RRR + +PDL R K++ +E++
Sbjct: 10 ENFDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLERRSLDKAKVRSTQEKIRVAL 69
Query: 424 LLSDQVFV 447
+ +
Sbjct: 70 YVQQAALI 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,742
Number of Sequences: 37544
Number of extensions: 188598
Number of successful extensions: 592
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -