Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16818| Best HMM Match : Prefoldin (HMM E-Value=0.00051) 75 3e-14
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07) 30 1.0
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7) 29 2.3
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 4.1
SB_20986| Best HMM Match : RVT_1 (HMM E-Value=0.0048) 28 5.4
SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17) 28 5.4
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 5.4
SB_10465| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 5.4
SB_7704| Best HMM Match : DivIVA (HMM E-Value=9.6) 28 5.4
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7) 27 9.4
SB_10298| Best HMM Match : CaMBD (HMM E-Value=0.58) 27 9.4
>SB_16818| Best HMM Match : Prefoldin (HMM E-Value=0.00051)
Length = 162
Score = 75.4 bits (177), Expect = 3e-14
Identities = 34/88 (38%), Positives = 61/88 (69%)
Frame = +1
Query: 172 KSYSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQI 351
K + GIPEA F+D+V +FM S +++ + V++S DE+ RKYK ME L TK+++L+ Q+
Sbjct: 16 KKHRGIPEAGFLDDVGKFM-STSSSDSAESVIRSFDEQLRKYKFMEINLLTKKKKLQGQV 74
Query: 352 PDLARTIEVIEKLKEQKEEVETQFLLSD 435
PDL ++E+++ L+ +K V ++ + +
Sbjct: 75 PDLKSSLEMVKLLQAKKANVMLEYSIDE 102
>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Frame = +1
Query: 262 VLKSLDEKHRKY----KVMEYTLATKRRRLRQQIPDLA-RTIEVIEKLKEQKEEVETQFL 426
+L+ ++EK RK ++ E K+ +L QQ +L + ++ ++++KE+K+E+E + L
Sbjct: 287 MLRQIEEKKRKLEEEERIKEEVEKQKKIKLEQQEKELRDKLLKNLKEMKERKQELERELL 346
>SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07)
Length = 658
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Frame = +1
Query: 154 VEPSNPKS-YSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKV-MEYTLATK 327
++ NPK+ +SG E+ F+ + ++ P+ +LK LDE +YKV +E +A +
Sbjct: 127 LDARNPKNQHSGTLESYFIKPIQRILRYPLLLR---TILKLLDETSEEYKVLLEAVVAIE 183
Query: 328 RRRLRQQIPDLARTIE----VIEKLKEQKEEVETQFLLSDQV 441
++ I ++ R E + +L E ++ E + D++
Sbjct: 184 --KVATHINEMQRITERFAPIFNQLVEDYDDCEVSDVTIDRL 223
>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +1
Query: 217 DEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTL-ATKRRRLRQQIPDLARTIEVIEKLK 393
D ++S + + + + KHR K + + A +++ +++P + +E+ EKLK
Sbjct: 234 DSILQSKVEKDQLLMDTLETIAKHRADKSRQAAVRAEQKKASEKKLPKDPKLLELQEKLK 293
Query: 394 EQKEE--VETQFL 426
+KEE +ETQ L
Sbjct: 294 AKKEERRIETQRL 306
>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
Length = 412
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Frame = +1
Query: 160 PSNPKSYSGIPEAEFVDN-----VDEFMKSPINAEGVD-------VVLKSLDEKHRKYKV 303
PS+ K+ S + E E + N V+EF+K D V+L+ + + + +V
Sbjct: 248 PSSTKTTSDLEEGEILKNEDRKWVEEFLKGIAPTSNTDQHATETKVMLQETERRLGEKEV 307
Query: 304 MEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVE 414
E T KRR+ +Q+ + +EK +K ++
Sbjct: 308 QELTEKWKRRKRKQEWLKRRKIKRTLEKQAAEKRRLQ 344
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 262 VLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQFLLSDQV 441
+L+ + RK K +E L + + + D IEV+ K EEV + L++
Sbjct: 384 LLEDVSSNKRKMKELEDNLLYRLTSTQGSLVDDESLIEVLSVTKTTAEEVSQKLLVAADT 443
Query: 442 FVKAN 456
+K N
Sbjct: 444 EIKIN 448
>SB_20986| Best HMM Match : RVT_1 (HMM E-Value=0.0048)
Length = 247
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 223 FMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQK 402
F + P AE +L + H + E T K R + +L +T +++LKE +
Sbjct: 96 FARVPFGAEASPFMLGATIHHHLDRQPTELTNTDKALRENTYVDNLMQTGNDVDELKEFR 155
Query: 403 EEVETQF 423
EE F
Sbjct: 156 EEATRIF 162
>SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17)
Length = 837
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 292 KYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVE 414
KY + +A KR L+Q +LA T V++ K + EVE
Sbjct: 315 KYHFVAKGVAPKRAALQQATEELAETQRVLDAAKARLTEVE 355
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +1
Query: 193 EAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTI 372
EAE + +EF ++ E + + SL+ + + YK Y L T+ L ++ L
Sbjct: 2041 EAELSNIKEEFTENKTGVETTEKKVVSLESEIKDYKQSIYRLGTEVESLARERDSLT--- 2097
Query: 373 EVIEKLKEQKEEVETQFLLSDQV 441
E I+ + ++E ++L S +
Sbjct: 2098 EEIKSKDLRLGDIEKKYLKSQNI 2120
>SB_10465| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 352
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 261 YIDSFSIDR*FHKFVYIIYKFSFWYSRI-RLRVRGFY 154
YID+ +R F K + YK ++WY R + GFY
Sbjct: 129 YIDNDEREREFIKSCAVQYKGAWWYKNCHRANLNGFY 165
>SB_7704| Best HMM Match : DivIVA (HMM E-Value=9.6)
Length = 163
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 172 KSYSGIP-EAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQ 345
K+ +G P E + +D +DE I A ++ K+L+++ + K + T+ T+RR+ R+
Sbjct: 3 KAGTGPPLEVDGIDKLDENEFLKIQASRLEDQTKALEQEVQTLKKIIQTIETRRRKNRR 61
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 413 STSSFCSFNFSITSIVRAKSGICCRNRLLLVANVYSITLYLRCFSSRLFKTTSTPSALI 237
+ +SFCS N + S ++ G C + + +S+T L+ L +S SAL+
Sbjct: 289 AVTSFCSCNLCVPSNTPSRHGNECADGKATTSYSHSVTNLLKNIYEALCSDSSRASALL 347
>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 193 EAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTI 372
EA+F + +EF K + G+ SL+ ++ + +A + +LR+Q+ L R
Sbjct: 465 EAQFKERTEEFEKMKKDVVGLKNKKSSLETSVQRAEKDLEKMAGPQTQLREQL-RLCRA- 522
Query: 373 EVIEKLKEQKEEVE 414
E I +LK E ++
Sbjct: 523 EAIGQLKRHSESIQ 536
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 241 NAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQ 420
N+E +D+ K + + K+ V ++++ P+ I V EK+KEQ + E Q
Sbjct: 829 NSEEIDLNEKDENTRQLKFAVKWRKRVREKKQEALPSPETRAIIIVAEKIKEQGKTAELQ 888
>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
Length = 251
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 154 VEPSNPKSYSGIPEAEFVDNVDEFMKS-PINAEGVDVVLKSLDEKHRKYKVMEYTLATKR 330
V PSN GI E + +V EF+K +N+E VD + S D RK V + + +++
Sbjct: 119 VNPSNRNVLEGISETKQTFDVYEFLKEMELNSE-VDGLEDSRDA--RKLSVEQSSSTSEQ 175
Query: 331 RRLRQQIPDLARTIEVIEKLK-EQKEEVE 414
++Q P +V E L+ E + EVE
Sbjct: 176 TAEKKQSP-----FDVYEFLRAEDEAEVE 199
>SB_10298| Best HMM Match : CaMBD (HMM E-Value=0.58)
Length = 266
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 KHRKYKVMEYTLATKRRRLRQQIPDLA--RTIEVIEKLKEQKEEVETQFLLSDQVFV 447
+HR K +E L + ++R+++ D+A + ++ K ++ +E ++ + D V+V
Sbjct: 178 EHRYCKFLETGLRSDFNKIRKKLSDMAGIQLQNLVRKSRQLQESIQQDVMKEDCVYV 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,457
Number of Sequences: 59808
Number of extensions: 229900
Number of successful extensions: 751
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -