Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    28   0.067
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.82 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   1.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 265 LKSLDEKHRKYKVMEYTLATKRRRLRQQIPDL 360
           +KSL+E+ RK+ V +  L+ ++R LR+++  L
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQL 128


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 334 RLRQQIPDLARTIEVIEKLKEQKEEVETQ 420
           RLR+ I  LAR ++ IE  K     VE++
Sbjct: 93  RLREGIGSLARILKTIENFKGTVTHVESR 121


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 445 VKANVPPTKSVCLWLGANVMLEYS 516
           +K   PP K   +W+G +++   S
Sbjct: 102 IKIIAPPEKKYSVWIGGSILASLS 125


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
 Frame = -1

Query: 521 SRLYSNITLAPSHKH--TDFVGGTLAFTNT*SLRRNCVSTSSFCSFNFSITSIVRAKSGI 348
           S +Y  ++ A +H H          AF  T S+     ST++  +   +  ++  A +G 
Sbjct: 86  SSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVPGFGSTAASSAALAAAAAVDAATAGD 145

Query: 347 -CCRNRLLLVANVY--SITLYLRCFSSRLFKTTSTPSALIGDFINSSTLSTNSAS 192
             CR    L  NV   S    +        +  +TPS+L+     SS +S  SAS
Sbjct: 146 KSCRYTASLAGNVAPASADPMVNYTLGHHHQNGATPSSLVSSASASSAVSAASAS 200


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 208 LQIQLLVFQNTT*GSRVLLRLLPFLFIVK 122
           L++QL++ + +T   R+LL +LP    VK
Sbjct: 220 LEVQLVIEEQSTEQERLLLSVLPEHVAVK 248


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 260 TSTPSALIGDFINSSTLSTNS 198
           TST S ++ + +NS+   TNS
Sbjct: 334 TSTKSTIVRNHLNSTCSVTNS 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,288
Number of Sequences: 438
Number of extensions: 2272
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)