Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.3  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   5.2  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 139 LSYYCFSHINCVCWCW 92
           LSY CFS +  +C CW
Sbjct: 146 LSYICFSSLIRICHCW 161


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  TQHSNTNIHN*YVRNNNKRDVPDYLF 159
           T HS+T   + Y +NN   D PD LF
Sbjct: 32  TSHSSTATSSHYSKNNLPSDSPDLLF 57


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 434 QDHKIILFQTKILRPRYHHYEHCFILSS 351
           Q H I  F+T I   R+ H++H  +LS+
Sbjct: 56  QVHTITCFETGIEVARFTHHDHNLLLST 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,996
Number of Sequences: 5004
Number of extensions: 32512
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)