Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    28   4.0  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    28   4.0  

>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -2

Query: 142 HLSYYCFSHINC------VCWCWNVEFNHNFYC 62
           +LSY+  SH +C      +  CWN++  H  YC
Sbjct: 492 YLSYFRISHASCRAFPEEISHCWNLQALHVTYC 524


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 154  GNQAHLSYYCFSHINCVC 101
            GN A    YCF H  C+C
Sbjct: 1866 GNMARFDAYCFQHNKCLC 1883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,372
Number of Sequences: 37544
Number of extensions: 162910
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)