Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              31   0.76 
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         28   5.4  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -2

Query: 133 YYCFSHINCVCW-----CWNVEFNHNFYCC 59
           YYC+ +  C C+     C+   + H++YCC
Sbjct: 486 YYCYYYCYCYCYYCCYYCYCYYYYHHYYCC 515


>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 163 HKIGNQAHLSYYCFSHINCVCWCWNVEFNH 74
           HK  ++  + Y+C+    CVC   NV   H
Sbjct: 160 HKFNDRGVVEYFCYDCDACVCHICNVAIQH 189


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 35  CLLNLKSNTTIKIVIKLNIPTPTYTIN 115
           C+L+ + NT +  VIK N PT    +N
Sbjct: 878 CILDERDNTVVTAVIKSNAPTDATKLN 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,993
Number of Sequences: 59808
Number of extensions: 226981
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)