Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    47   2e-06
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    28   0.73 
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   0.97 
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   3.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   6.8  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
 Frame = +1

Query: 178 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQK---IWVRENYKAMDXX 348
           PFKT   A+H    +   TI+V  K+ +++++    + LKK +K      ++  KA +  
Sbjct: 38  PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93

Query: 349 XXXXXXXXX----RSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 516
                         ++ L+ AK I+L+E    P A  + I ++T  R  R+ + GWVHR+
Sbjct: 94  AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153

Query: 517 R 519
           R
Sbjct: 154 R 154


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 168 ERETIQDNIESNASCWQRAISHNLCR 245
           E +TI DN+ SN   WQ+   H + R
Sbjct: 59  ELKTIDDNVHSNNLSWQKIQEHEVIR 84


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 97  VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 231
           VGN+ LS I  +                FK  L+ +   GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 400 KKILLQEDPSLPKATVVKICETTEHR 477
           +KILL E P  P A   K+CET   R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 495 DAYPLTTVFSCFTYFHNSGL 436
           D Y +  V SCFTYF   G+
Sbjct: 272 DEYLVPFVVSCFTYFLGDGI 291


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 201 CFQYCLEWFLFRT 163
           CF +  EW LFRT
Sbjct: 91  CFHFLSEWLLFRT 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,811
Number of Sequences: 5004
Number of extensions: 33671
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)