Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    32   0.32 
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028           31   0.74 
12_01_0193 + 1436165-1437247                                           29   3.0  

>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 225 WLFASMMHCFQYCLEWFLFRTITCVIIAILIRGIYLGQTKVSNVRHVERLLTNY 64
           W F  +  CF   L++FL       I+A ++ G +  +    NV  +E ++  Y
Sbjct: 344 WSFGKLALCFALLLQFFLLDLAAADIVAFVVAGFHQCRYGYKNVADLEGVVAGY 397


>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
          Length = 341

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 457 IFSQQWPLVNLDPLAGESSLLHLSF 383
           IF+QQW L+NLD  A E  +  L F
Sbjct: 151 IFNQQWKLINLDLSANEKEVAMLDF 175


>12_01_0193 + 1436165-1437247
          Length = 360

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 385 NLDEAKKILLQEDPSLPKATVVKICETTEHR 477
           N D A+ IL +   S+P +TV K C  T+ R
Sbjct: 63  NQDAAEAILRKRKASMPPSTVTKFCTDTDLR 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,069
Number of Sequences: 37544
Number of extensions: 202511
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)