Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)             95   3e-20
SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)                  31   0.58 
SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)                       30   1.3  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
          Length = 305

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
 Frame = +1

Query: 175 KPFKTILKAMHHA-GKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDXXX 351
           KPFK++L+A+ HA G    P I VDSK + + ++  AK+QLKK  K++ +E  K+ +   
Sbjct: 81  KPFKSVLQALQHAEGDAHQPVIMVDSKAEGERFEKIAKAQLKKATKLYQQEKRKSEEREK 140

Query: 352 XXXXXXXXRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLR 519
                   R +NL++A+ I ++ D SLP A  +KI +TT+ R QR+ I GWVHRLR
Sbjct: 141 KEAEKAQQREKNLEDARNITIKPDESLPVAKQIKIRDTTDCREQRVKIFGWVHRLR 196


>SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)
          Length = 721

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 298 KIQKIWVRENYKAMDXXXXXXXXXXXRSQNLD-EAKKILLQEDPSLPKATVVKICETTEH 474
           KI+KI V  ++K                   D + +KI +  D  + K  + KIC T+ H
Sbjct: 113 KIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICIWKICVTSNH 172

Query: 475 RGQRICIRGWVHRLR 519
           + ++IC+    H++R
Sbjct: 173 KIRKICVTS-DHKIR 186


>SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)
          Length = 141

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 228 KWLFASMMHCFQYCLEWFLFRTITCVII 145
           KW +  ++ C  Y L W LF TI  +I+
Sbjct: 103 KWHWVILLFCVSYILSWVLFGTIWWLIV 130


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 208 HAGKEPFPTIY-VDSKDDTKDYDVAAKSQLKKIQKIWVRE 324
           H  K     ++ VDS DD  +YD+ +  Q+ K  K    E
Sbjct: 547 HMSKRDLAAVFGVDSHDDVPEYDITSPVQISKDGKFIAHE 586


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 519 PETMYPPSDAYPLTTVFSCFTYF 451
           P T Y P+ +Y LTT ++C T +
Sbjct: 142 PTTSYTPTTSYTLTTSYTCTTSY 164


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 25/78 (32%), Positives = 32/78 (41%)
 Frame = +1

Query: 94  DVGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFPTIYVDSKDDTKDYD 273
           D  N S SE  TS              K F T+LKA H  G  P P +       T    
Sbjct: 195 DFKNYSYSERPTSAPPASGFVPRLYDPKTFATVLKAPH--GSVPIPGLAQFVDKVTSSVP 252

Query: 274 VAAKSQLKKIQKIWVREN 327
           VAA S +K +Q +  R++
Sbjct: 253 VAA-SVMKGVQVLAKRDS 269


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 405 DSPARGSKFTKGHCCENM*NN*TP 476
           +SP  GSK TKG  C N  N+  P
Sbjct: 118 NSPHTGSKITKGFVCRNWANDFLP 141


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 511  DVPTL*CISSDHGVQLFHIFSQQWPLVNLDPLAGESSLLHLSFEIS 374
            D+P   C+ SD G Q+  + ++  P+V+L  L  E     LS ++S
Sbjct: 1553 DLPVSSCVLSDDGDQVVMVINKSRPIVSL-VLTHEVGSRELSVDVS 1597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,890
Number of Sequences: 59808
Number of extensions: 231504
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)