Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   3.0  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   5.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   6.8  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    25   9.0  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 394 VHTSK*ATK-ILPTKIMLIFYYKLVHVTQLTQYLYKF*IR 510
           V TSK AT+ +LP   ++ FY ++    Q TQ+  KF IR
Sbjct: 658 VRTSKVATRWLLPA--LMAFYIEIESTGQSTQFYDKFNIR 695


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 138 YKELFLFIY*KNILLLYQGFPNYFGKEI 221
           YK L+ FIY KN+   Y   P   GK+I
Sbjct: 414 YKSLYDFIYDKNLQNAYNMKPLLDGKQI 441


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 461 WYM*HNLLSTFISF 502
           WYM HNL++T I +
Sbjct: 337 WYMSHNLINTIIDY 350


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 234 VLNYESLSQNSLGIPDRVAIYFFNK 160
           VLNYES  ++ L IP+  +I  +N+
Sbjct: 31  VLNYESRQKSDLLIPNSNSISIYNQ 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,753
Number of Sequences: 5004
Number of extensions: 44616
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)