Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66030.1 68414.m07494 cytochrome P450-related weak similarity...    28   4.4  
At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine...    27   5.8  

>At1g66030.1 68414.m07494 cytochrome P450-related weak similarity to
           cytochrome P450 [Catharanthus roseus] GI:4688670
          Length = 167

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 24  IDKMENLNIAAHIKTPFYLY*LMLLIFKVDLLNTNHFQYK 143
           +D +EN N+  H K P++    + ++   D +N NH  Y+
Sbjct: 64  VDLLENSNLTFHFKGPWFAG--IDILATADSVNINHIYYR 101


>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine
           deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 298

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 32  NGK-FEYCCPHQNPILFVLTNAPNIQSGFTEHKPLSIQRIVFI--YLLKKYIATLSGIPK 202
           NG  F+  CPH   +L  + NA + +   T+    S QR + +  YL +KY++  + +PK
Sbjct: 101 NGSYFDPPCPHCCQLLQEIRNASSTKLLITDP---SRQRDMSLSTYLPQKYLSLYNEVPK 157

Query: 203 LFWER 217
            F+ R
Sbjct: 158 YFFAR 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,735
Number of Sequences: 28952
Number of extensions: 196004
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)