Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F07f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    31   0.13 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   0.41 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   1.2  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   1.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   1.6  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    26   3.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.8  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    26   3.8  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   5.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   6.7  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   6.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   6.7  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   8.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.8  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 195  LAFLWPIKKSKEPIDQ--EKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQ 347
            L FL  IK  K  + +  +KL K  V + ++   ENG YEE + + K + +++
Sbjct: 1023 LLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENGLYEEAFRIYKIHNKHE 1075


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 204 LWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLK 329
           LW +          K  K  V+D++D L +  H+EE   LL+
Sbjct: 253 LWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLE 294


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 80  LNKSNLLFK*FVETKSNKSCERDHTDTISKKLNI-CFYRFSIFVAH 214
           +NK  +    F +  SN  CE DH + I + ++   +Y + IF  H
Sbjct: 78  VNKDGIFRYDFNQVASNDPCEDDHVEVIDRNIDEGNWYFWGIFDGH 123


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 174 LIFVSTGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDI 353
           +I  S G+A L  + K+       ++ +L  +   DE+ +   YE+ Y  +K    N   
Sbjct: 394 MIDKSNGMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGP 453

Query: 354 EIQWRICRAL 383
            I  +I R++
Sbjct: 454 LIDIKIPRSI 463


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 282 ELFENGHYEECYNLLKNYEE-NQDIEIQWRICRALYNMAKESKYNNAQKKDFIFEAYEII 458
           +LF+N H+E    +L+ Y+  N++  +      A  +   E +Y   QK      + EI+
Sbjct: 233 DLFQNSHFESLLVMLRKYDSPNKNAVLILPTLYAFIDKVLEVEYLPDQKVQLRSNSVEIL 292

Query: 459 SK 464
            K
Sbjct: 293 QK 294


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +3

Query: 66  NLYPILTKVICFSSDLLKPNRIKVAREITQIQFPRNLIFVSTGLAFLWPIKKSKEPIDQE 245
           N  P+ T+   FSS L KP+   +   ++Q   P+N +        L  +  +      +
Sbjct: 495 NSSPVQTRTSLFSSRLSKPSN-PIVSSVSQANAPKNALHSMPSPTSLANLPSNLSDTQYK 553

Query: 246 KLKKLSVID 272
           KL  L +++
Sbjct: 554 KLYNLYLVE 562


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 118 FNKS-LEKQITFVKIGYKFLYLDIVPNYLVNSKV 20
           +NKS +  Q+ FV +G  F+Y    P+   N+KV
Sbjct: 4   YNKSRIVGQLLFVALGITFIYYLFTPSVNSNAKV 37


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 306 EECYNLLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDFIFEAYEIISKHLNNNE 482
           E C NL   YE   D E   ++   LYN+  +S   N  ++         +S  L N+E
Sbjct: 523 EGCLNLAAYYE---DAEFPQKLSNHLYNLCVKSSNVNYARECISLSIKIAVSHKLTNDE 578


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 354 EIQWRICRALYNMAKESKYNNAQKKDFIFEAYEIISKHLNNNENN 488
           +I W    + Y+  +E+  NN+ K + + +    +S+++NN + N
Sbjct: 34  DIDWNQASSNYSARQENFGNNSSKINSVNDHVSTLSRYVNNIKLN 78


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 124 FGFNKSLEKQITFVKIGYKFLYLDIV 47
           F     LEK    + IGY F YL IV
Sbjct: 149 FNLVHELEKYHAIISIGYMFRYLKIV 174


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 342 NQDIEIQWRICRALYNMAKESKYNNAQK-------KDFIFEAYEIISKHLNNNENN 488
           N D E    +C++ + ++KES  ++A K        D   + Y ++ +HL  +E++
Sbjct: 492 NDDDEFAQTVCKSFFYISKESGTDSALKFLYKCLNSDSSADLYSLLEEHLPLSEHD 547


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 345 QDIEIQWRICRALYNMAKESKYNNAQK 425
           Q IEIQW I  +LY +AK  K    +K
Sbjct: 44  QKIEIQWSITDSLY-IAKYGKLKKTKK 69


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 210 PIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDI 353
           P   S +P    K K++ + DD D   EN       + ++   E++DI
Sbjct: 23  PTPTSPKPKRSLKKKRIVLSDDEDGTIENSKVPASKSKVQKRNESEDI 70


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 207 WPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQD 350
           W +K  +E + Q ++    V+D    L + G Y   Y+L   Y+   D
Sbjct: 210 WTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMD 257


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 180 FVSTGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYN-------LLKNYE 338
           F +  ++FL   ++  EP++Q+    +S   +  E   NG+ +  +N       L  N  
Sbjct: 627 FTADDISFLKAEEEVGEPVNQDTAGNMSDSSEGGEAVVNGNSQHHHNRDDASSGLSSNGS 686

Query: 339 ENQDIE 356
           EN+ +E
Sbjct: 687 ENESLE 692


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 267 IDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDFIF 440
           +D  D+ +EN  ++  +NL    +  +D +I+   C  L +     K  + +KK   F
Sbjct: 208 VDGHDDNYENNRFDHQFNLSNEPDLLEDHDIEVICCGDLLDQVTHPK--DMRKKTVYF 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,608
Number of Sequences: 5004
Number of extensions: 42382
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)