Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F07f
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 0.41
09_03_0043 + 11851889-11852790,11853388-11853877 31 0.41
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 31 0.41
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 30 1.3
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 29 1.7
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 2.9
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 29 2.9
02_04_0421 - 22756903-22757384,22757585-22758047 28 3.8
08_02_1557 + 27867977-27869134 27 6.7
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 27 6.7
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 27 8.8
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 216 KKSKEPIDQEKLKK-LSVIDD----SDELFENGHYEECYNLLKNYEENQDIEIQWRICRA 380
K K PI +E L L ++ D S + +E LKN+ N+D +++ + C A
Sbjct: 1014 KLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSA 1073
Query: 381 LYNMAKESKY 410
+ NM + S Y
Sbjct: 1074 IGNMCRHSSY 1083
>09_03_0043 + 11851889-11852790,11853388-11853877
Length = 463
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 279 DELFENGHYEECYNLLKNYEENQDIEIQWRICRA--LYNMAKESKYNNAQKKDFIFEAYE 452
D L+ CY + ++EN+ W++ A L ++ ES+ +N K +
Sbjct: 182 DPLYPKKPQTACYEMDAPWQENRKSRPWWQVAEADGLASVVAESEMHNVGKNELPRPTQR 241
Query: 453 IISKHLNNNEN 485
LNN+EN
Sbjct: 242 AHGSKLNNHEN 252
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 219 KSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEI---QWRICRALYN 389
++KE + EK+K+LSV+ ++ + NG ++E N+ + E+++ + + W + +
Sbjct: 636 QAKELVASEKIKELSVLANAKDGATNGSHKEESNVKGDSEDDEPVMVVAKMWENSKVTDD 695
Query: 390 MAKESKYNNAQKK 428
+ + K N+ + +
Sbjct: 696 ASSKEKGNDGESE 708
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 60 YKNLYPILTKVICFSSDLLKPNRIKVARE--ITQIQFPRNLIFVSTGL 197
YKNL+ + C LLK NRIK+ +E + I PRN F + L
Sbjct: 527 YKNLWIDAERTNCELKYLLKQNRIKIGQESSMAHIGGPRNPSFQACDL 574
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 273 DSDELFENGHYEECYNLLKNY-EENQDIEIQW-RICRALYNMAKESKYNNAQKKDFIFEA 446
DS + + EE LLKN + Q E + R+C L + +E K NAQ ++ + +
Sbjct: 254 DSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQE 313
Query: 447 YEIISKH 467
E S +
Sbjct: 314 REKCSSY 320
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 28.7 bits (61), Expect = 2.9
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +3
Query: 63 KNLYPILTKVICFSSDLLKPNRIKVAREITQIQFPRNLIFVSTGLAFLW---PIKKSKEP 233
+NL + CF S K I Q R FV GL+ LW P K S+E
Sbjct: 1196 RNLSADVIARACFGSSFTKGEEIFCKLRQLQKAIARQDSFV--GLSALWKYLPTKSSQEI 1253
Query: 234 IDQEKLKKLSVIDDSDELFENGHYEECYNLLKN 332
++ +L ++D + E HY++ +N L N
Sbjct: 1254 QMLDEQVRLLILDVAKE---QHHYQDSHNSLVN 1283
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 228 EPIDQEKLKKLSVIDDSDELFENGHY-EECYNLLKNYEENQDI 353
EPI +EK +K D+D + E G E CY + +DI
Sbjct: 328 EPIVEEKFEKFEWDSDNDNVLEPGSMRENCYIYFLGFHPYKDI 370
>02_04_0421 - 22756903-22757384,22757585-22758047
Length = 314
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 297 GHYEECYNLLKNYEENQDIEIQWRICRA---LYNMAKESKYNNAQKKDFIFEAYEIISKH 467
G ++ + +LK N D + RI +A L+N K+S+ N + ++ I+ KH
Sbjct: 215 GIVKKQWKILKEIPHNDDDRVHTRIIKAAFALHNFRKDSRDVNYRHNHPLYNNNPIVQKH 274
Query: 468 LNNNENNFAVHK 503
+ + +A ++
Sbjct: 275 PSFSHMYYATNR 286
>08_02_1557 + 27867977-27869134
Length = 385
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 207 WPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEE 311
+PIK S P + K+KK++ D+ D+ E+ H++E
Sbjct: 351 YPIKTSPNPAPK-KIKKVTDDDEDDDDEEHRHHDE 384
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 147 ITQIQFPRNLIFVSTGLAFLWPIKKSKEPIDQEKLKKLSVID 272
+ +I P + + G LWP KEP+D VID
Sbjct: 250 MAEIDVPGHALSWGVGYPSLWPSDSCKEPLDVSNNFTFGVID 291
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 246 KLKKLS--VIDDSDELFENGHYEECYNLLK 329
KL LS V+D++D + E GH+ E ++++
Sbjct: 305 KLHSLSFFVLDEADRMIERGHFHELQSIIE 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,113
Number of Sequences: 37544
Number of extensions: 212443
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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