Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F07f
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_13249| Best HMM Match : Toxin_24 (HMM E-Value=8.7)                  36   0.020
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   5.2  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                28   5.2  
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)                       27   6.9  
SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)                     27   6.9  
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     27   6.9  
SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)                 27   9.1  
SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)                   27   9.1  
SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)                  27   9.1  

>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/82 (36%), Positives = 48/82 (58%)
 Frame = +3

Query: 267 IDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDFIFEA 446
           ++ +DELF+N   +E Y +L  ++E+      WR+ RA  N A+ +K  N +KK F +EA
Sbjct: 115 LEKADELFDNNAIDELYEVLIKFKESDKAGTMWRLARAARNKAERAKDGN-EKKKFTYEA 173

Query: 447 YEIISKHLNNNENNFAVHKWXA 512
            E   K +  ++ +FA HKW A
Sbjct: 174 LEYAKKSVELDDRDFACHKWYA 195


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
 Frame = +3

Query: 69  LYPILTKVICFSSDLLKPNRIKVAREITQIQFPRNLIFVSTGLAFLWPIKKSKEPIDQEK 248
           L+ ++++V      LL  +    A  +  +      + V   +     +   ++ +   +
Sbjct: 279 LWELISQVFTHGKPLLYTHSTAAAAIVAIVAVVAVAVVVVVVVVVDTSVTNQEKHVSNIQ 338

Query: 249 LKKLSVIDDSDELFENGHYEECYNLLK--NYEENQDIEIQWRICRALYNMAKESKY 410
           L +  VID++D + E GHYEE  ++L+  + +++ ++E+         N + E +Y
Sbjct: 339 LLRYLVIDEADRMVEQGHYEELSSILELIHLKKSGNMEVDQEDAERPSNSSSEKRY 394


>SB_13249| Best HMM Match : Toxin_24 (HMM E-Value=8.7)
          Length = 152

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 261 SVIDDSDELFENGHYEECYN-LLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDFI 437
           S+I+  D+ +E     E +   ++  +E ++ E+ WR+ RA   +A  +  ++ +K+ ++
Sbjct: 6   SIIEKLDKEYEEAVTSEKFKESIEANKETKEPEVLWRLSRASRVVADRTT-DSTEKQTYV 64

Query: 438 FEAYEIISKHLNNNENNFAVHKWXA 512
               E  S+ +  ++ N   HKW A
Sbjct: 65  NMIKEFASRGIEIDDKNSGCHKWFA 89


>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 225 KEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLK 329
           +E +   +L +  VID++D + E GHYEE  ++L+
Sbjct: 2   EEHVSNVQLLRYLVIDEADRMVEQGHYEELSSILE 36


>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 252 KKLSVIDDSDELFENGHYEECYNLLKNYEE-NQDIEIQWRICRALYNMAKESKYNNAQKK 428
           +++ +  D +       +EECYNL K+ EE N+  +    +C  +  + KE      +KK
Sbjct: 240 RRVCMFTDPENCLSYEKWEECYNLQKDVEECNKIWKCTHPVCGGV-GVVKEGVGGGGKKK 298

Query: 429 DFIFE 443
             + E
Sbjct: 299 KSLLE 303


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 283 SCLKTDIMRNAIIYSKIMRKTRTLKFNGVSVVHYTTWQKNLSITMHK 423
           SC ++ I  N  IY  +++ T   K  GV V     W +  SI + K
Sbjct: 60  SCKRSPIETNYSIYGHVLKLTPAQKDLGVVVARDLKWSEQSSIAVSK 106


>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = +3

Query: 213 IKKSKEPIDQEKLKKLSVIDDSDELFEN 296
           I+  ++ +++E +KK+SVIDDS E+ ++
Sbjct: 103 IQYQQKIMEKESMKKMSVIDDSPEVIDD 130


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 219 KSKEPIDQEKLKKLSVIDDSDELFENGHY--EECYNLLKNYEENQD 350
           K+K  +D+E   K + I  S E  E  HY   +C  L K  E+  +
Sbjct: 400 KAKSMMDEETKHKENAIKRSKEFEERSHYFESQCSTLAKELEQRNN 445


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 220  FFMGHKNAKPVETNI-KFLGNCICVISLATFIRFGFNKSLEKQITF 86
            F++ ++      TN  K L  CI  + + TF+  GFN S+   +TF
Sbjct: 1247 FYVFYEQYLTAATNAWKNLLYCIAAVFVVTFLLMGFNLSIALIVTF 1292


>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
          Length = 1080

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 234 IDQEKLKKLSVIDDSDELFENG---HYEECYNLL-KNYEENQDIEIQWR-ICRALYNMAK 398
           +D+   K  +V + S E F+N      +E Y  L K++EE  + EIQW   C + Y    
Sbjct: 30  VDRRDEKLRNVKNSSVETFKNAVRIRRDEVYERLSKDFEEISEREIQWHSTCYSSYTSEH 89

Query: 399 ESKYNNAQ 422
             ++ +A+
Sbjct: 90  NLRHCHAK 97


>SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)
          Length = 715

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 234 IDQEKLKKLSVIDDSDELFENG---HYEECYNLL-KNYEENQDIEIQWR-ICRALYNMAK 398
           +D+   K  +V + S E F+N      +E Y  L K++EE  + EIQW   C + Y    
Sbjct: 138 VDRRDEKLRNVKNSSVETFKNAVRIRRDEVYERLSKDFEEISEREIQWHSTCYSSYTSEH 197

Query: 399 ESKYNNAQ 422
             ++ +A+
Sbjct: 198 NLRHCHAK 205


>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 261 SVIDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAK----ESKYNNAQK- 425
           + +D   ++ EN       +LLK   E QD  ++ +IC A+  ++K    +  YN+ Q+ 
Sbjct: 42  ATVDFLKKIDENTQNLMKESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQEL 101

Query: 426 KDFIFE 443
             F+FE
Sbjct: 102 LKFLFE 107


>SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)
          Length = 244

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 292 KTDIMRNAIIYSKIMRKTRTLKFNGVSVVHYTTWQKNLSITMHKKRISYLKHMR 453
           K ++  N   +SK++  + +     V  +    + K LS+ +H+KR ++++  R
Sbjct: 165 KMEVAPNGFYFSKLLHYSNSYVNPIVYSIRIPKFSKTLSLFVHRKRQAFIESYR 218


>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
          Length = 474

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 108 DLLKPNRIKVAREITQI---QFPRNLIFVSTGLAFLWPIKKSKEPIDQEKLKKLSVIDDS 278
           D++KPN   +++ I  I        ++     +A + P+ K+ +       + +SV+   
Sbjct: 42  DIIKPNIDIISKPIADIINLSTRSGIVPKKLKVARVLPLFKAGDQAFYANYRPVSVLPVF 101

Query: 279 DELFENGHYEECYNLLKNYE 338
            ++FE   Y+  YN L  Y+
Sbjct: 102 SKIFEKVVYKRLYNFLIKYD 121


>SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)
          Length = 56

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 342 NQDIEIQWRICRALYNMAKESKYNNAQKKDFIFEAYEIISK 464
           +QD  +++  C ALYN+AK ++        F  E +E +SK
Sbjct: 19  DQDSRVRYYACEALYNIAKVAR---GSVLPFFNEVFEGLSK 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,352
Number of Sequences: 59808
Number of extensions: 284401
Number of successful extensions: 909
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)