Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F07f
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 466 CLEIISYASNMKSFFCALLYLDSF 395
           CL   +Y SNM S F  LL  ++F
Sbjct: 12  CLRWNNYQSNMTSVFHQLLQTEAF 35


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 393 AKESKYNNAQKKDFIFEAYEIISKHLNNNENNF 491
           +KE K  ++   ++ +  Y   + + NNN NN+
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNY 341


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 193 PVETNIKFLGNCICVISLAT 134
           P E   K LGNC+ V  + T
Sbjct: 21  PAELTAKLLGNCVRVSPVIT 40


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +3

Query: 387 NMAKESKYNNAQKKDFIFEAYEIISKHLNNNEN 485
           N+ +  + NN Q+ +++    +     LNN+ N
Sbjct: 360 NVPQSGRVNNTQRNEYLLALSDRNQNVLNNDLN 392


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 318 NLLKNYEENQ 347
           NLL NYE NQ
Sbjct: 43  NLLMNYENNQ 52


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +3

Query: 375 RALYNMAKESKYNNAQKKDFIFEAYEIISKHLNNNEN 485
           + + N+A   + N   K +++      + K +NN+ N
Sbjct: 359 KIIQNLAYSGRMNRIHKNEYMLALSNRMQKIVNNDFN 395


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 145 RSHRYNFQ 168
           R HRYNFQ
Sbjct: 54  RRHRYNFQ 61


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 145 RSHRYNFQ 168
           R HRYNFQ
Sbjct: 55  RRHRYNFQ 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,130
Number of Sequences: 438
Number of extensions: 3144
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)