Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F07f
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25810.1 68416.m03213 myrcene/ocimene synthase, putative simi... 30 0.80
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 29 1.8
At4g01895.1 68417.m00248 systemic acquired resistance (SAR) regu... 28 4.2
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co... 28 4.2
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 27 5.6
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 27 5.6
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 27 7.4
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 27 7.4
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi... 27 9.8
At4g11100.1 68417.m01802 expressed protein 27 9.8
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL... 27 9.8
>At3g25810.1 68416.m03213 myrcene/ocimene synthase, putative similar
to GI:9957293; contains Pfam profile: PF01397 terpene
synthase family
Length = 598
Score = 30.3 bits (65), Expect = 0.80
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 213 IKKSKEPID-QEKLKKLSVIDDSDELFENGHYE-ECYNLLKNY 335
+KK E ++ + +L+KL +IDD +L + H+E E N+L N+
Sbjct: 85 VKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNF 127
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 258 LSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYN---MAKESKYNNAQKK 428
+S+ DDSD++ H+ E L N DIE++ I ++ Y+ + ++KYN + K
Sbjct: 263 VSLDDDSDKVNVYFHFAEIQALRGNETREFDIELEEDIIQSAYSPTMLQSDTKYNLSPHK 322
>At4g01895.1 68417.m00248 systemic acquired resistance (SAR)
regulator protein NIMIN-1-related contains similarity to
NIMIN-1 protein GI:12057154 from [Arabidopsis thaliana]
Length = 140
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 252 KKLSVID-DSDELFENGHYEECYNLLKNYEE 341
K+++ ID D +E EN + +NL+KNY++
Sbjct: 11 KRINEIDEDEEEELENKKMDMFFNLIKNYQD 41
>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
contains Pfam PF00728: Glycosyl hydrolase family 20,
catalytic domain; contains Pfam PF02838: Glycosyl
hydrolase family 20, domain 2; similar to
Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
(N-acetyl-beta- glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
(Swiss-Prot:P07686) [Homo sapiens]
Length = 535
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 147 ITQIQFPRNLIFVSTGLAFLWPIKKSKEPIDQEKLKKLSVID 272
+ +I P + + G LWP K +EP+D VID
Sbjct: 267 LAEIDVPGHALSWGKGYPALWPSKNCQEPLDVSSDFTFKVID 308
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 499 CTAKL-FSLLFKCLEIISYASNMKSFFCALLYLD-SFAMLYNARQ 371
C KL F L+F L+++ K+FFC +L AM + R+
Sbjct: 390 CFGKLSFDLVFPLLKLVHCEGRKKAFFCCCCWLQVLLAMTHKPRR 434
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 240 QEKLKKLSVIDDSDELFENGHYEECYNLLK 329
Q K KL V+D+SDE+ G ++ Y++ +
Sbjct: 161 QTKAVKLLVLDESDEMLSKGLKDQIYDVYR 190
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 228 EPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESK 407
E ++ + K L ID+ E +EE NL +Y+E+ +I QW N KE
Sbjct: 277 ERLESSRQKLLMEIDNQSSEIEK-LFEENSNLSASYQESINISNQWE------NQVKECL 329
Query: 408 YNNAQKKDFI 437
N + ++ +
Sbjct: 330 KQNVELREVL 339
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 228 EPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESK 407
E ++ + K L ID+ E +EE NL +Y+E+ +I QW N KE
Sbjct: 278 ERLESSRQKLLMEIDNQSSEIEK-LFEENSNLSASYQESINISNQWE------NQVKECL 330
Query: 408 YNNAQKKDFI 437
N + ++ +
Sbjct: 331 KQNVELREVL 340
>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 657
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 177 IFVSTGLAFLWPIKKSKEPIDQEKLKKLSVID 272
IF+S+ + FLW K++KE D++ K++ ++
Sbjct: 538 IFISSSIIFLWRKKENKEG-DKDSKKQVQSVE 568
>At4g11100.1 68417.m01802 expressed protein
Length = 287
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 SVIDDSDELFEN-GHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDF 434
+++ D + L E H EE Y +K + EN+ E++ R L KE + +K F
Sbjct: 22 TLLKDYESLQERIKHAEEAYEAIKLHHENKAKELEVSNKRLLEECMKERREKAKVRKTF 80
>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
[Homo sapiens] GI:1381142
Length = 374
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 500 VHRKIIFIVI*VLGNYLICFKYEILFLCIVILR 402
+H K I VI N+ + K +LF+C+ + +
Sbjct: 337 LHNKFIVYVIECFQNHTLFHKVRVLFMCVYLFQ 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,866
Number of Sequences: 28952
Number of extensions: 197641
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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