Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F06f
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   207   6e-55
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   206   2e-54
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    47   1e-06
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.41 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   5.0  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   6.7  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  207 bits (506), Expect = 6e-55
 Identities = 95/120 (79%), Positives = 109/120 (90%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 61
           IHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  206 bits (502), Expect = 2e-54
 Identities = 94/117 (80%), Positives = 108/117 (92%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS
Sbjct: 62  LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 70
           IHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L+  DP RL   N LL +L  +G+L  K    D      +     RRL   + K  +++ 
Sbjct: 64  LDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQV 123

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIV 160
           +  A  LI Q H+RV   V+  P+++V
Sbjct: 124 VSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -2

Query: 304  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 173
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 333 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 202
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 485 VKRRPVNCNTTHYR--ANWVPGPPSRRRTPRDCSKVM 381
           +K+ P+ C   H +  + W   PP    +P+D SK++
Sbjct: 664 LKKTPI-CRWCHSKRSSEWFVAPPIEESSPKDKSKIV 699


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 178 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 77
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,872
Number of Sequences: 5004
Number of extensions: 44849
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)