Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F06f
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   190   4e-49
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   190   6e-49
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    42   2e-04
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.80 
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    29   2.4  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   3.2  
At1g43730.1 68414.m05028 hypothetical protein                          28   3.2  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   5.6  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   5.6  
At5g28615.1 68418.m03493 hypothetical protein                          27   5.6  
At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    27   7.4  
At1g60720.1 68414.m06835 hypothetical protein                          27   7.4  
At1g56020.1 68414.m06431 expressed protein                             27   7.4  
At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing...    27   9.8  
At1g02020.2 68414.m00122 nitroreductase family protein contains ...    27   9.8  
At1g02020.1 68414.m00121 nitroreductase family protein contains ...    27   9.8  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  190 bits (464), Expect = 4e-49
 Identities = 88/119 (73%), Positives = 106/119 (89%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64  LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 64
           IHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 124 IHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  190 bits (462), Expect = 6e-49
 Identities = 88/115 (76%), Positives = 103/115 (89%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64  LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 76
           IHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 124 IHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           ++  DP R+   + LL +L  +GV+  ++  L     L +  F  RRL T +     A+ 
Sbjct: 63  MDPADPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEH 121

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIV 160
              A   I Q H+RV  + +  P+F+V
Sbjct: 122 HKEAVTYIEQGHVRVGPETITDPAFLV 148


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 103 TSTEWRFQREVNVLARVQAHN 165
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = +3

Query: 267 PASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTIS------WGPSPRGGA 428
           P++    P SP ++       SS   P   Y P    G Y    S      + P P+ G 
Sbjct: 51  PSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGG 110

Query: 429 RYPIRPIVSRITIHWPSFY 485
            YP  P  + I  ++P +Y
Sbjct: 111 NYPYTPPPNPIVPYFPFYY 129


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 337 TDETRLCAWSED*GLLGASSADAGVQSW 254
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 219 SKFWHDGWTSPGQL 260
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 275 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 168
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 369 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 268
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 219 SKFWHDGWTSPGQL 260
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = -3

Query: 414 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 235
           E+D +RLFE    ++RL    +LD +   + Y  G+         L   +++   +K + 
Sbjct: 260 EQDVERLFESITSVKRLSLFVLLDIEDESM-YHNGIYFNQL--EHLNLHIYRDNWSKLL- 315

Query: 234 HARILIRQRHIRVRKQVVNIPSFIVRL 154
             R+L     +RV K VV++  FI  L
Sbjct: 316 -VRLLEDSPKLRVLKIVVDVSFFIGNL 341


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 225 FWHDGWTSPGQL 260
           FWHD WTS G L
Sbjct: 25  FWHDSWTSLGPL 36


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 189 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 362
           AC      +  KF   GWTSP       + DD  RS     Q  + +  +  PV+ +E
Sbjct: 4   ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58


>At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 245

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 22/98 (22%), Positives = 44/98 (44%)
 Frame = -3

Query: 420 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 241
           L  K+ K L    A +  +  +G+L+ +  K +     + EDF+    + Q     L + 
Sbjct: 23  LRYKELKNLISSPAPVESIF-VGLLNAEIDKFNAFFVEQEEDFIIHHKELQYRIQRLVEK 81

Query: 240 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 127
             H   + R+    +RK +VN    +V L +  +I+++
Sbjct: 82  CGHNDEMSRENISEIRKDIVNFHGEMVLLVNYSNINYT 119


>At1g02020.2 68414.m00122 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 543

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 268 GVQSWPGEVHPSCQNFDPAKAY 203
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


>At1g02020.1 68414.m00121 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 642

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 268 GVQSWPGEVHPSCQNFDPAKAY 203
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,095
Number of Sequences: 28952
Number of extensions: 257228
Number of successful extensions: 740
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)