Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 4.0
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 5.2
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 5.2
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 28 5.2
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 27 6.9
11_06_0661 - 26009838-26010950,26011302-26011802 27 9.1
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120... 27 9.1
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562... 27 9.1
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 503 LPKLAHLAPSSDLRLHRSSKPEFSPI 426
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 242 KSIVGTGYRGERLIEPSSSWFRPKFPSG 325
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 169 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 279
DG+ +V + SGE D+S ++Q+D+ ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 423 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 262
K E LRSF + LP K+ I A++ GN+ GRN GS L L+
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 419 NFKWVRTPAYSNDEAGDLMTVPSGPILVSRTGA 517
+F W P + N++AG + PS P+ S +G+
Sbjct: 282 SFAWAMIPLFENNQAGGAAS-PSSPLAPSMSGS 313
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 175 HHLSGPSICAQSAPSFTDWK 116
HHL GP+ + S+P WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316
>07_01_1163 -
11011362-11011760,11011803-11011847,11011880-11012014,
11012101-11012994
Length = 490
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -3
Query: 375 FALPDETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATVLHQGFP*L 196
+ + D +K+YI P ++++ S PL+P+ ++LH+R + + +
Sbjct: 341 YVVIDYNFVKYYIAKCQPSRP---HKVIKNIRSYDPLHPIECMELHLRKVVIRY--YEGK 395
Query: 195 RPDQA*FTIFRVPAFVLR 142
RPD F + A VLR
Sbjct: 396 RPDVDFAKFFVLNAKVLR 413
>06_01_0750 +
5624983-5625173,5626229-5626291,5626421-5626967,
5627075-5627226,5627317-5627533
Length = 389
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 226 YGPPSGFPLTST*PGIV-HHLSGPSICAQSAPSFTDW 119
+GP FP +S+ G HH+ G + A +A S + W
Sbjct: 156 HGPVVQFPWSSSASGSAGHHVDGAAAAAATASSASSW 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,799
Number of Sequences: 37544
Number of extensions: 311113
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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