Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F04f
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    29   1.6  
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    27   8.3  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    27   8.3  

>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = +1

Query: 10   IPFIFNQT*----IVY----FTWNVYRTFFVFLVFYTIFLYFCF 117
            IP++F QT     IVY    F W   + F+ F V Y  FLYF +
Sbjct: 969  IPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTY 1012


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 374 IGTLSEIFVGTDLRGFLARCAAFF 445
           +GTL ++  G DL+ FL   A FF
Sbjct: 150 LGTLQDVSCGRDLKNFLLVIAGFF 173


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 9/45 (20%)
 Frame = +1

Query: 10   IPFIFNQT*----IVY----FTWNVYRTF-FVFLVFYTIFLYFCF 117
            IP IF QT     IVY    F W V + F ++F +F+T F+YF F
Sbjct: 1278 IPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFT-FMYFTF 1321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,696,998
Number of Sequences: 37544
Number of extensions: 65090
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)