Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   3.9  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   3.9  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   5.2  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   5.2  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   6.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.0  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 174 YFPFQWISFGFVLIAIFVPLF 112
           Y PF W  F   ++  F+PLF
Sbjct: 189 YSPFLWFYFFITIVGNFIPLF 209


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 399 ENGVQFDGIEIAEFKGYDLGLKASKDFTEGSLILTIPSKVM 521
           +NGVQ+  ++    +  +  LK +K  T G   LTI ++V+
Sbjct: 67  KNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVV 107


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 493 RDPSVKSFEALRPRSYPLNSAISIPSNWTP 404
           R   VK   A+RPR+ PLN      S   P
Sbjct: 508 RTSPVKELPAIRPRTIPLNGVAPYESELRP 537


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 381 YLQWL-RENGVQFDGIEIAEFKGYDLGLKASKDFTE 485
           Y QW   E    FDG  +  F   DL   A K FTE
Sbjct: 164 YFQWTGEEEDDDFDGATLTIFLAEDLFPNAVKYFTE 199


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 502 VKIRDPSVKSFEALRPRSYPLNSAISIPSNWTPFSLSHCKYLS 374
           V +R P+V  F+ L+    PL S +S+PS+  PF++   K +S
Sbjct: 214 VLLRCPNV--FKKLKEVQQPL-SDVSVPSDVLPFTIKLLKKIS 253


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 207 LILFFSVGIIYYFPFQWISFGFVLIAIFVPLF 112
           +I ++S  I+YY P  W+     LI + +P F
Sbjct: 99  VIEYWSQLILYYVPVYWLLKAIFLIWLALPKF 130


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 454 RSYPLNSAISIPSNWTPFSLSHCK 383
           R+Y L S ++  +N+ PF  S CK
Sbjct: 583 RAYNLKSHMNTHTNYRPFQCSICK 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,566
Number of Sequences: 5004
Number of extensions: 38121
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)