Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)                  46   3e-05
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   5.4  
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           27   9.4  

>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
          Length = 549

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +3

Query: 369 HIDKYLQWLRENGVQFDGIEIAEFKGYDLGLKASKDFTEGSLILTIPSKVM 521
           HI+++ QW + NG   + +EI +F    LGL+A+ D  E  + + +P K++
Sbjct: 289 HIEEFTQWFKANGGTAEHVEIHDFGDQGLGLRATADLQENQVFVAVPEKLL 339


>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 234 VLALYQQEKLILFFSVGII-YYFPFQWISFGFVLI 133
           V+ ++QQ    +F +V  + Y+F   WISFGF  +
Sbjct: 218 VIVIHQQFSERVFGTVRALKYWFIVHWISFGFTFV 252


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 282 VPNFCLRYQSLEIYW*VLALYQQEKLILFFSVGIIYYFP-FQWISFGFVLIAIFV 121
           V N CL   SL+I++ +L  +Q +    F  V    ++P F+    GF    I +
Sbjct: 204 VTNICLALASLDIFFVILVDFQWDAYFNFHGVHKFMHYPEFRGYQRGFYYAYIVI 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,202
Number of Sequences: 59808
Number of extensions: 230143
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)