Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 35 0.031
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical ... 32 0.29
AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical ... 31 0.66
AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical... 30 0.87
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 29 1.5
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 29 1.5
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 29 1.5
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70211-3|CAA94156.1| 363|Caenorhabditis elegans Hypothetical pr... 27 6.2
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 35.1 bits (77), Expect = 0.031
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Frame = +3
Query: 207 AFLVDRVL-RLTSIFQAT------GNVSKSWEHHLEIEKLVNEITNIEG-----XXXXXX 350
A L D++L ++ ++F+ T N+ + W+ H+EI +++N++ +I+
Sbjct: 7 AELEDQILGKIATLFEETLSKQPPSNIVELWKEHVEIRRILNDVISIQAKLGDTDERLAN 66
Query: 351 XXXXXXHIDKYLQWLRENGVQFDGIEIAEFKGYDLGLKASKDFTEGSLILTIPSKVM 521
I +L W G+ + + I K L L+A+ + ++ +P M
Sbjct: 67 SKRDADSIKTFLAWADGVGIARNNVTIGSTKTAGLSLQATGPIPKSHIVARVPRHAM 123
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 246 IYW*VLALYQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFVP 118
IYW V + +I FF+ I+ YFP W++ L+ +++P
Sbjct: 110 IYWTVFGAFS---IIDFFAASIMSYFPIYWVAKAAFLLYLYLP 149
>AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical
protein Y71F9B.3 protein.
Length = 183
Score = 31.9 bits (69), Expect = 0.29
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 243 YW*VLALYQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFVPLF 112
YW + A+ ++ FFSV I+ FP W+ L+ +++P F
Sbjct: 94 YWVIFAILS---VVEFFSVQIVAVFPVYWLFKSIFLLYLYLPSF 134
>AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical
protein Y92H12BR.6 protein.
Length = 401
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 372 IDKYLQWLRENGVQFDGIEIA--EFKGYDLGLKASKDFTEGSLILTIPSKVM 521
+++++ W + G QFDG+EI G+ A+ F G +T+P M
Sbjct: 1 MNEFISWCKGRGYQFDGLEITCPPPGNCGNGIYATTGFRTGKAFITLPETDM 52
>AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical
protein F56B3.6 protein.
Length = 205
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 246 IYW*VLALYQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFVP 118
IYW A+ L+ FFS I+ +FPF +I+ L+ +++P
Sbjct: 133 IYWTCFAVLY---LVDFFSEAILSWFPFYYIAKACFLVYLYLP 172
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 258 QSLEIYW*VLAL-YQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFV 121
Q+LEI+ + EK ILF+ VG +F F W F LI IF+
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFL 442
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 258 QSLEIYW*VLAL-YQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFV 121
Q+LEI+ + EK ILF+ VG +F F W F LI IF+
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFL 442
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 258 QSLEIYW*VLAL-YQQEKLILFFSVGIIYYFPFQWISFGFVLIAIFV 121
Q+LEI+ + EK ILF+ VG +F F W F LI IF+
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFL 442
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 499 KIRDPSVKSFEALRPRSYPLNSAISIPSNWT 407
K+ D ++K +EAL Y + +A IP WT
Sbjct: 280 KMFDTTMKKYEALVSTLYCIENACKIPKRWT 310
>Z70211-3|CAA94156.1| 363|Caenorhabditis elegans Hypothetical
protein K11E4.3 protein.
Length = 363
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3
Query: 417 DGIEIAEFKGYDLGLKAS---KDFTEGSLILT 503
+GIEI K YDLG S KDF +GS ++T
Sbjct: 258 NGIEIVSSKEYDLGCSPSSIWKDF-DGSFLIT 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,345,717
Number of Sequences: 27780
Number of extensions: 194274
Number of successful extensions: 436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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