Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.36 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   1.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 352 RVFLNWVPSMLVISFTNFS 296
           +VFLNW+P +L++  T +S
Sbjct: 352 QVFLNWMPRLLMMRRTPYS 370


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 RLTSIFQATGNVSKSWEHHLEIEK 302
           RL++ + +TG   K +EH L+  K
Sbjct: 100 RLSAKYDSTGEYKKRYEHGLQFAK 123


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 RLTSIFQATGNVSKSWEHHLEIEK 302
           RL++ + +TG   K +EH L+  K
Sbjct: 100 RLSAKYDSTGEYKKRYEHGLQFAK 123


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 61  ELETWNY*IAKNRFKWNK 8
           E+E++ Y +   R+KWN+
Sbjct: 155 EIESFGYTMRDIRYKWNE 172


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 442 LNSAISIPSNWTPFSLSHCKYLS 374
           +N A+S+P +  P ++    YL+
Sbjct: 703 MNRAVSVPQSHQPGAMEQVSYLT 725


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 61  ELETWNY*IAKNRFKWNK 8
           E+E++ Y +   R+KWN+
Sbjct: 94  EIESFGYTMRDIRYKWNE 111


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 61  ELETWNY*IAKNRFKWN 11
           E+E++ Y +   R+KWN
Sbjct: 155 EIESFGYTMRDIRYKWN 171


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 334 PS*EILELFGKL 369
           P+ EILELFG++
Sbjct: 62  PANEILELFGRM 73


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 334 PS*EILELFGKL 369
           P+ EILELFG++
Sbjct: 62  PANEILELFGRM 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,541
Number of Sequences: 438
Number of extensions: 2491
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)