Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu...    29   1.4  
At5g51340.1 68418.m06366 expressed protein                             29   1.9  
At3g55420.1 68416.m06155 expressed protein                             29   1.9  
At4g28700.1 68417.m04101 ammonium transporter, putative similar ...    29   2.5  
At5g10340.1 68418.m01199 F-box protein-related / SLF-related con...    28   3.3  
At3g07620.1 68416.m00912 exostosin family protein contains Pfam ...    27   5.8  

>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
            putative similar to preprotein translocase secA subunit,
            chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
            thaliana]; non-consensus GA donor splice site at exon 4
          Length = 1022

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 183  YLQKRKELAFLVDRVLRLTSIFQATGNVSKSWEHHLEIEKLVNEITNIEG 332
            YLQKR+ +      +++    F    N+ + W+ HL+  K V +   + G
Sbjct: 893  YLQKREIVEKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRG 942


>At5g51340.1 68418.m06366 expressed protein 
          Length = 726

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 358 RVRVFLNWVPSMLVISFTNFSISK*CSQLLLTLPVA*NILVSLSTLST---RKANSFLF- 191
           R  + L  +PS   + F N+S+   C  LL + P   N+LV    L++   +  +++L+ 
Sbjct: 72  RSLLLLKSIPSSYDLKFQNYSLLSHCYHLLASFPPQRNLLVKALELASSVPQDISAYLWS 131

Query: 190 CRYN 179
           C +N
Sbjct: 132 CNFN 135


>At3g55420.1 68416.m06155 expressed protein
          Length = 216

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 481 VKSFEALRPRSYPLNSAISIPSNWTPFSLSHCKYL 377
           VKSF   R R++ L   +S+PS+ +P  LS   YL
Sbjct: 41  VKSFTIRRARTFELLKLLSLPSSSSPPLLSTAAYL 75


>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
           SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 504

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 515 FGWYG*NQRSFSEIFRSF 462
           FGWYG N  SF+ IF+++
Sbjct: 261 FGWYGFNPGSFATIFKAY 278


>At5g10340.1 68418.m01199 F-box protein-related / SLF-related
           contains weak hit to Pfam  Pfam PF00646: F-box domain
           and to TIGRFAM TIGR01640 : F-box protein interaction
           domain; weakly similar to  self-incompatibility (S-)
           locus F-box (GI:29420811) [Prunus mume]
          Length = 445

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 511 DGMVKIRDPSVKSFEALRPRSYPLNSA-ISIPSNW 410
           D   + +DPS+ SFEALR      ++A + IP+ W
Sbjct: 131 DPCARQQDPSISSFEALRTFLVESSAASVQIPTPW 165


>At3g07620.1 68416.m00912 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 470

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -3

Query: 471 SKL*DQDHXXXXXLFQSHRIGHRFLLATANIYQCEFAEEFEYFLTGFLLCW*FHSLISRF 292
           S L D+D+     ++++    HR  L    +++    EE +  +  + LC   +S+   F
Sbjct: 112 SPLGDEDYVPHGDIYRNPYAFHRSYLLMEKMFKIYVYEEGDPPIFHYGLCKDIYSMEGLF 171

Query: 291 LNDVPNFCLRYQS 253
           LN + N  L+Y++
Sbjct: 172 LNFMENDVLKYRT 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,218
Number of Sequences: 28952
Number of extensions: 180398
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)