Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F02f
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 130 6e-32
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 128 2e-31
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 0.51
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.6
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 2.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 2.1
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 2.1
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 2.7
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 3.6
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 6.3
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 130 bits (314), Expect = 6e-32
Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Frame = +1
Query: 4 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 177
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 178 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 270
CK+ +AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 128 bits (310), Expect = 2e-31
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Frame = +1
Query: 4 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 177
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 178 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 270
C +T+AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 0.51
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 197 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 90
+T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 100 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 189
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 109 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 198
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 87 LFDHFT*RGTVTCAIFASNSNLFGT 13
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 2.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 52 VCHICQ*FQPFWYVWPF 2
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 2.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 135 GCYETFLCRHLVL*AMQEDCSRRSLGILH 221
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 191 VLLHRLQDQMPTQERFIASLPQNEQV 114
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 149 RFIASLPQNEQVYFA 105
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,357
Number of Sequences: 5004
Number of extensions: 25292
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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