Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F02f
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         133   4e-32
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   126   4e-30
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   2.8  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   4.9  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   4.9  
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative...    26   8.6  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  133 bits (321), Expect = 4e-32
 Identities = 58/88 (65%), Positives = 69/88 (78%)
 Frame = +1

Query: 4   MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 183
           MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 184 KRTVAGGAWVFSTTAASSCRSAVRRLRE 267
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  126 bits (304), Expect = 4e-30
 Identities = 56/88 (63%), Positives = 66/88 (75%)
 Frame = +1

Query: 4   MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 183
           M KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 184 KRTVAGGAWVFSTTAASSCRSAVRRLRE 267
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 34  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 129
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 209 QAPPATVLLHRLQDQMPTQERF 144
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 209 QAPPATVLLHRLQDQMPTQERF 144
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
           strong similarity to ferredoxin--nitrite reductase
           [Nicotiana tabacum] GI:19893; contains Pfam profiles
           PF03460: Nitrite/Sulfite reductase ferredoxin-like half
           domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
           domain
          Length = 586

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 160 GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 270
           G +S KRC+  +   AWV +      C++ +   R++
Sbjct: 286 GFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDL 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,761,963
Number of Sequences: 28952
Number of extensions: 138149
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)