Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 31 0.56
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 0.74
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 30 0.98
07_03_1498 + 26995209-26995752,26995945-26996513 29 3.0
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 3.0
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 4.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 5.2
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 27 6.9
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 27 9.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 9.1
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 9.1
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 9.1
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 135 EKYPHQA---WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQE 293
EKYP A RF G+R R+L + L E+G I +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 30.7 bits (66), Expect = 0.74
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 182 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 24
S+ I+ S ++ ++L+P A IC + V++KQ+LK TF W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 397 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEK 507
D K +++RFD+ + EE+ V D+ L++ +H+++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKE 176
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 334 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 450
++L P HW + P + + G G+ RF + TP E
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPME 283
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 183 ILKHQRALRCRNEEDGRRNEQIQIRTH 263
+ K +R + C+NE GRRN R H
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQH 655
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/31 (29%), Positives = 24/31 (77%)
Frame = +1
Query: 169 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 261
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 177 YRILKHQRALRCRNEEDGRRNEQIQIRTHEQRK 275
Y L+ QR R R EE+ R+ E+ + R +RK
Sbjct: 837 YLNLEEQRLQRLREEEEARKQEERRKREETERK 869
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 118 ADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEE 237
A S + ++P+ L D S +E S++R DA K EE+
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQ 91
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 340 LAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLL 483
L S D L + + +GK K + Q P+EIVV V +LL
Sbjct: 99 LVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLL 146
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 440 LPKRSLLRLSTTNYWSTPNTRRNLIRN 520
L ++S L LST++ +S + RRNL+R+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRS 741
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = +1
Query: 181 EFSSIRERFDAEMRKME---EEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 351
E +S+ + +++++E EE ++L + SN+ K HS S++ +
Sbjct: 759 EVTSLERKIQIQVQELEQKREEADAMHAQLQDERSNHMQKEAALRALENLHSQSQEEVKQ 818
Query: 352 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEI--VVKTVDNKLLVHAKHEEK 507
D +S + + LKL D+SQ + + + D+ LL K EK
Sbjct: 819 MARDVEHSNKKLSDLENNNLKLH-DLSQGLKKTVAELNSMKDSALLQQQKSSEK 871
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 394 GDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKS 510
G GK L R+D++Q P + + + V + + + E ++
Sbjct: 979 GSGKDLNSRYDIAQKLPSQRITRDVPSPVFAWSPSESRT 1017
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,730
Number of Sequences: 37544
Number of extensions: 196479
Number of successful extensions: 636
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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