Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303F01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 91 6e-19
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 91 6e-19
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 87 7e-18
U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock prot... 43 1e-04
U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock prot... 43 1e-04
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 39 0.002
U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock prot... 38 0.006
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 36 0.013
U53180-6|AAA96288.1| 202|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 28 3.5
M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein ( C.ele... 28 4.7
K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock prot... 28 4.7
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 27 6.2
AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical ... 27 6.2
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 27 6.2
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 27 6.2
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 90.6 bits (215), Expect = 6e-19
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 30/156 (19%)
Frame = +1
Query: 133 KRNIPIKLGDFSVIDTEFSSIRERFDAE-------MRKMEEEMSKFR------SELMNRE 273
+R I + ++SVID EF ++R+RF+ E M+++ E +R + + N+
Sbjct: 3 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPNGGPPAAISNQP 62
Query: 274 SNNFFKXXXXXXXXXQ-------------HSDSRQLAE-PSH---WDSLNSPLIQDEGDG 402
N + + H S +A P++ D+L SPLI+DE DG
Sbjct: 63 YNAYSNTSSHHETSNRTGGFGSPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDG 122
Query: 403 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKS 510
KTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+
Sbjct: 123 KTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKT 158
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 90.6 bits (215), Expect = 6e-19
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 30/156 (19%)
Frame = +1
Query: 133 KRNIPIKLGDFSVIDTEFSSIRERFDAE-------MRKMEEEMSKFR------SELMNRE 273
+R I + ++SVID EF ++R+RF+ E M+++ E +R + + N+
Sbjct: 17 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPNGGPPAAISNQP 76
Query: 274 SNNFFKXXXXXXXXXQ-------------HSDSRQLAE-PSH---WDSLNSPLIQDEGDG 402
N + + H S +A P++ D+L SPLI+DE DG
Sbjct: 77 YNAYSNTSSHHETSNRTGGFGSPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDG 136
Query: 403 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKS 510
KTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+
Sbjct: 137 KTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKT 172
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 87.0 bits (206), Expect = 7e-18
Identities = 37/50 (74%), Positives = 45/50 (90%)
Frame = +1
Query: 361 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKS 510
D+L SPLI+DE DGKTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+
Sbjct: 12 DNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKT 61
>U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock protein
protein 17,isoform a protein.
Length = 149
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 424 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
DVSQ+ PEE+ V VDN+L++ KH EK+D
Sbjct: 62 DVSQFEPEELKVNIVDNQLIIEGKHNEKTD 91
>U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock protein
protein 17,isoform b protein.
Length = 148
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 424 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
DVSQ+ PEE+ V VDN+L++ KH EK+D
Sbjct: 61 DVSQFEPEELKVNIVDNQLIIEGKHNEKTD 90
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 352 SHWD---SLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
S WD N +++ + ++ DV +TP+EI VK +LL+H +HE +SD
Sbjct: 12 STWDWPLQHNDGVVKVHNTKEKFEVGLDVQFFTPKEIEVKVSGQELLIHCRHETRSD 68
>U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock protein
protein 43 protein.
Length = 368
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +1
Query: 367 LNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
+NS ++ D+ + + D Q+ PEEI VKT+D+ L++ +HE+ D
Sbjct: 103 VNSNVVNDD---RRFAVDMDCYQFRPEEIQVKTLDDTLMIEGRHEDIRD 148
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 36.3 bits (80), Expect = 0.013
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 340 LAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDT 516
++ PS S N L + DVS+Y + + V VDN ++V H EK DT
Sbjct: 58 ISSPSVVGSQNGNLTSIRVTNTSFHAILDVSKYDADSLKVTVVDNNIIVEGSHGEKEDT 116
>U53180-6|AAA96288.1| 202|Caenorhabditis elegans Hypothetical
protein D1014.4 protein.
Length = 202
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/89 (26%), Positives = 40/89 (44%)
Frame = +2
Query: 245 NSDQNS*TEKATISSRAQLARRHLHSIVTADSLPSPVTGIA*TRRSFKTRVTARLSSFAL 424
+++ S E TIS +Q+A + L IV+ PV+ +R F +SF
Sbjct: 113 SNELQSVQELRTISGESQMAEQALDYIVSKTFKKIPVSSQKMSRDIFNVCFVFSNNSFIQ 172
Query: 425 MSASILPKRSLLRLSTTNYWSTPNTRRNL 511
+ + R +L +S+ N S P T+ L
Sbjct: 173 STRDAINYRQILVISSLNDISVPLTQDEL 201
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 199 ERFDAEMRKMEEEMSKFRSELMNRE 273
E F+ + +KM EE KFR EL +
Sbjct: 701 EEFECQRKKMHEERRKFREELRTNQ 725
>M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 144
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 361 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
D++ ++ DE ++ DVS + PE + +K +L + E KS+
Sbjct: 42 DNIGEQIVNDESK---FSVQLDVSHFKPENLKIKLDGRELKIEGIQETKSE 89
>K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock protein
16-48a protein.
Length = 144
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +1
Query: 361 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 513
D++ ++ DE ++ DVS + PE++ ++ +L + E+KS+
Sbjct: 42 DNIGEQIVNDESK---FSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSE 89
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 189 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 296
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 194 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 230
>AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical
protein Y79H2A.1b protein.
Length = 466
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 189 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 296
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 145 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 181
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 189 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 296
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 231 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 267
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 189 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 296
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 258 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,063,588
Number of Sequences: 27780
Number of extensions: 180973
Number of successful extensions: 700
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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