Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303F01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   1.9  
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   2.5  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   4.4  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   4.4  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   4.4  
At2g12940.1 68415.m01419 expressed protein                             27   7.7  

>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 395 VTARLSSFALMSASILPKRSLLR-LSTTNYWSTPNTRRNL 511
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 160 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 261
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 142 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 249
           IP++  D   +   F S+R   + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 436 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 519
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 436 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 519
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


>At2g12940.1 68415.m01419 expressed protein
          Length = 294

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 349 PSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKL 480
           PS  ++ +S L+  +GD    +L FD + YT +E+      NKL
Sbjct: 101 PSPGNTPSSRLV--DGDQNASRLEFDANDYTDDELNKIAKSNKL 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,331
Number of Sequences: 28952
Number of extensions: 166449
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)