Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               182   2e-46
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               73   1e-13
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    31   0.76 
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)                    30   1.0  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  182 bits (442), Expect = 2e-46
 Identities = 81/89 (91%), Positives = 87/89 (97%)
 Frame = +2

Query: 80  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 259
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 260 NFGSYVTHETRHFIYFYLGQVAILLFKSG 346
           NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = +2

Query: 98  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTWHCIVGRNFGSY 274
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+  +WH +VG  FG  
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFE 85

Query: 275 VTHETRHFIYFYLGQVAILL 334
           +THE R+ +Y + G+   +L
Sbjct: 86  ITHEVRNLLYMFFGKYTTIL 105


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 518 ENRHTSTSLASSCHTLAASYLWECTTARASHENLQRLSI**YCVRC*QKNR 366
           EN+ T   L   CH   + Y  +C   R S E+   L +  YC  C +K R
Sbjct: 173 ENKMTGNKLVE-CHECHSHYHQKCHEPRVSDEDANDLRLVWYCTLCIKKMR 222


>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
          Length = 354

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 200 FIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFY 310
           ++K+E D    PT+  + G  +G     +T+HFIY Y
Sbjct: 42  YVKREGDPLVRPTFP-VAGFTYGIQYAAKTKHFIYVY 77


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 451 NVPQPEPRMRICKGYPSDNTASAANKKIEVMLNGLT 344
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,466
Number of Sequences: 59808
Number of extensions: 311967
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)