Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15930.1 68417.m02419 dynein light chain, putative similar to...   138   2e-33
At4g27360.1 68417.m03927 dynein light chain, putative similar to...    91   4e-19
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    86   1e-17
At1g52250.1 68414.m05895 dynein light chain type 1 family protei...    85   2e-17
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    84   5e-17
At1g23220.1 68414.m02904 dynein light chain type 1 family protei...    81   6e-16
At5g35370.1 68418.m04204 lectin protein kinase family protein co...    29   1.4  
At1g54680.1 68414.m06234 expressed protein                             29   2.5  
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t...    28   3.3  
At3g02910.1 68416.m00286 expressed protein contains Pfam domain ...    27   5.8  
At1g62870.1 68414.m07099 expressed protein                             27   7.7  

>At4g15930.1 68417.m02419 dynein light chain, putative similar to
           dynein light chain 2 [Mus musculus] GI:15545995;
           contains Pfam profile PF01221: Dynein light chain type 1
          Length = 103

 Score =  138 bits (335), Expect = 2e-33
 Identities = 59/86 (68%), Positives = 74/86 (86%)
 Frame = +2

Query: 89  RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFG 268
           ++AVIK+ADM ++MQ++A++ A  A EK+++EKDIA  IKKEFDKK+  TWHCIVGRNFG
Sbjct: 18  KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFG 77

Query: 269 SYVTHETRHFIYFYLGQVAILLFKSG 346
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 78  SYVTHETNHFVYFYLDQKAVLLFKSG 103


>At4g27360.1 68417.m03927 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 103

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
 Frame = +2

Query: 80  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKYNPTWHCIV 253
           M + KAV+ + DM + M++DA+  A++AL+ F++ +   IA FIKKEFD+ Y   W CIV
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 254 GRNFGSYVTHETRHFIYFYLGQVAILLFK 340
           G +FGS+VTH +  FI+F +G + ILLFK
Sbjct: 61  GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = +2

Query: 80  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYNPTWHCIV 253
           M + KA ++  DM  +MQ  A+  A+Q+L+ F++     IAA IKKEFD++Y   W C+V
Sbjct: 1   MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 254 GRNFGSYVTHETRHFIYFYLGQVAILLFK 340
           G NFG + TH    FIYF+LG +  L+FK
Sbjct: 61  GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89


>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 94

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
 Frame = +2

Query: 80  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 253
           M + KA+++++DM  +MQ  A+  A+QAL+ F++   K IA  IKKEFD++Y   W C+V
Sbjct: 1   MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 254 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG*T 352
           G NFG + TH    FIYF L  +  L+FK   T
Sbjct: 61  GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = +2

Query: 110 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 280
           ADM   MQ  A  CA     +LEKF+  K +A  +KKEFDK Y P WHCIVG +FGS+VT
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVT 180

Query: 281 HETRHFIYFYLGQVAILLFKS 343
           H T  FIYF + ++ +LLFK+
Sbjct: 181 HSTGCFIYFSMDKLYVLLFKT 201


>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 129

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
 Frame = +2

Query: 41  IVHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKK 211
           ++   K K+ QD+  +    ++ +DM    Q  A   + + L     + D   +A  +KK
Sbjct: 18  LIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKK 77

Query: 212 EFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 343
           +FD  Y P WHCIVG +FGSYVTH T  F+YF + +V +LLFK+
Sbjct: 78  DFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121


>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 345 PLLKSSIATCPR*K*MKWRVSCVTYEPKLRPTMQCQVGLYFLSNSFLMNAAM-SFSMLNF 169
           P L+  + +    K ++  + CV  EP LRPTM   VG+ F  +  L N  M S + L F
Sbjct: 762 PRLEGRVTSQEAEKLVRIALCCVHEEPALRPTMAAVVGM-FEGSIPLGNPRMESLNFLRF 820

Query: 168 SSA*VAQST 142
                A+S+
Sbjct: 821 YGLRFAESS 829


>At1g54680.1 68414.m06234 expressed protein
          Length = 289

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92  KAVIKNADMSEEMQ-QDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFG 268
           K + K  DMS +   +  +D  ++++E   +++D +    KE + K +P        ++ 
Sbjct: 63  KLLPKKLDMSSKTDLRSLIDSVSRSIESVYVQED-SVRTSKEMEIKTSPE------EDWF 115

Query: 269 SYVTHETRHFIYFYL 313
           S V HE+ HF+  YL
Sbjct: 116 SVVQHESGHFLVGYL 130


>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related similar to geranyl
           diphosphate synthase large subunit [Mentha x piperita]
           GI:6449052
          Length = 205

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 219 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 112
           SNSFL++AA+ FS+L  N  ++ +AQ    C  S L S
Sbjct: 3   SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40


>At3g02910.1 68416.m00286 expressed protein contains Pfam domain
           PF03674: Uncharacterised protein family (UPF0131)
          Length = 187

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 119 SEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHF 298
           +EE +++  D  T+A     +E   A +  K ++++    W    GR+FG+Y  +E R +
Sbjct: 109 AEEEEEEEGDLETEAPSSCVVE---AYYAHKSYEEEL---WRRNRGRSFGAYTENEARGY 162

Query: 299 I 301
           +
Sbjct: 163 V 163


>At1g62870.1 68414.m07099 expressed protein
          Length = 796

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 170 KFNI--EKDIAAFIKKEFDKKYNPTW 241
           KFN+  E+ +   +++ F K Y+P W
Sbjct: 545 KFNVVEERQVEKIVERRFKKSYHPAW 570


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,083
Number of Sequences: 28952
Number of extensions: 208355
Number of successful extensions: 602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)