Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   149   2e-37
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   148   6e-37
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.97 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   0.97 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   3.9  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   5.2  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.8  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   6.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  149 bits (361), Expect = 2e-37
 Identities = 66/132 (50%), Positives = 99/132 (75%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           +G+ +T+DKLR + +KWQT IEA+  +KTTDGY+ RVF IGFT + +   +KT YAQ +Q
Sbjct: 101 NGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQ 160

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           +RAIR+KM ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK 
Sbjct: 161 IRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKA 220

Query: 161 PRFEISKLMELH 126
           P+ +  KL+ELH
Sbjct: 221 PKHDAQKLLELH 232


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  148 bits (358), Expect = 6e-37
 Identities = 66/132 (50%), Positives = 96/132 (72%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           +G D+T+DKLR + +KWQ+ IEAN  +KTTDGY+ R+F IGFT++     +KT YAQ +Q
Sbjct: 101 NGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQ 160

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           +RAI +KM ++I        ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK 
Sbjct: 161 IRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKA 220

Query: 161 PRFEISKLMELH 126
           P+ +  KL+ELH
Sbjct: 221 PKHDAQKLLELH 232


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 134 PSTSRSRNGASSTLSPFGCKHRAE 205
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -1

Query: 314 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 183
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 408  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 316
            LHW+    L+  +Q +  P H+GQ  S  + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -1

Query: 401 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 273
           G T +DS+ ++    A H + R +++K  E ++ D +N  +++
Sbjct: 7   GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 201 ARCLHPKGESVEEAPFRDLEVD 136
           +RCL    ++V+EA  RDLE++
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIE 43


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 491 RWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 354
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 512 DLTTD-KLRWMXKKWQTLIEANIDVKTTDGYVLR 414
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +3

Query: 135 HQLRDL-ETGPLQHFHLSDANIAQRV-DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACN 308
           H   DL E     H H    +    V +A      V GNG++N L+H+  E   +D +  
Sbjct: 265 HHFCDLSEISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMETAETDESYT 324

Query: 309 DFTHFLSDCSDLS 347
           D     +   +LS
Sbjct: 325 DLDDTFARLKNLS 337


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 312 FTHFLSDCSDLSVLGVARLALAQGVLIGETNAEDT 416
           F   L +CS    L    + L +  L G+TN++ T
Sbjct: 574 FIEVLKECSQTWKLAQRSIVLIENTLKGKTNSQST 608


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 410 FCIGFTNKDSLSQRKTCY 357
           FC G  NKD++   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,505
Number of Sequences: 5004
Number of extensions: 36842
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)