Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303E10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 171 3e-43
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 169 2e-42
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 167 4e-42
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 2.3
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 28 5.2
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 6.9
12_02_0090 + 13493311-13494180 27 9.1
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527 27 9.1
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 27 9.1
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040... 27 9.1
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 171 bits (416), Expect = 3e-43
Identities = 75/131 (57%), Positives = 104/131 (79%)
Frame = -1
Query: 518 GMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 339
GM TTDKLR + KKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 338 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 159
R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 162 RQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Query: 158 RFEISKLMELH 126
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 169 bits (410), Expect = 2e-42
Identities = 74/131 (56%), Positives = 103/131 (78%)
Frame = -1
Query: 518 GMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 339
GM TTDKLR + KKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 338 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 159
R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 162 RQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Query: 158 RFEISKLMELH 126
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 167 bits (407), Expect = 4e-42
Identities = 74/131 (56%), Positives = 102/131 (77%)
Frame = -1
Query: 518 GMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 339
GM TTDKLR + KKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+
Sbjct: 102 GMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQI 161
Query: 338 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 159
R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P
Sbjct: 162 RQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAP 221
Query: 158 RFEISKLMELH 126
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 275 EVVNKLIPDSIAKDIEKACHGIYPLRD 195
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 39 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 167
L+TL +G++V R +SG P A V +H L E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 161 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 277
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
>12_02_0090 + 13493311-13494180
Length = 289
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -2
Query: 409 SALVSPIRTP*ANARRATPSTLRSEQSERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTS 230
+A ++ +R+ RA S + +ERK ++LH + TL + TP+P T+
Sbjct: 21 AAAIAVVRSARFRKERARASDA-TRAAERKKRRALHQAARTLAPAHKQAA---TPIPATT 76
Query: 229 RRPA 218
RRP+
Sbjct: 77 RRPS 80
>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
Length = 710
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 382 ESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFFXIHLSLS 501
E ++ PM + R Y V F+S C+FF I+ SLS
Sbjct: 470 EDIVEPPMFERRYHYNGVSFSSPNPMCPNCYFFGINSSLS 509
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 424 TFYVSSALVSPIRTP*ANARRATPSTLRSEQS 329
T + SAL+SP +P ARRA PS++R + S
Sbjct: 5 TTQLRSALLSPAASPSRRARRA-PSSVRCDSS 35
>02_05_1308 +
35601314-35601390,35602486-35602566,35603513-35604064,
35604998-35605408,35606830-35607544
Length = 611
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 234 HREGLPWHLPSARCLHPKGESVEEAPFRDLEV 139
H +G W L R L P G +V+ RD E+
Sbjct: 212 HHDGEAWRLKIQRLLPPHGITVKHISDRDTEI 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,041
Number of Sequences: 37544
Number of extensions: 266533
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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