Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         180   5e-46
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   7.1  
SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)                   27   9.4  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  180 bits (439), Expect = 5e-46
 Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 5/147 (3%)
 Frame = -1

Query: 467 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 288
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 287 SELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----X 123
           ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+I KLME+H      
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSH 121

Query: 122 XXXXXXXXXGDKSERPEGYEPPVQESV 42
                    G K +R EG+EPP+Q++V
Sbjct: 122 ATTTTTDETGTKIDR-EGFEPPIQDTV 147


>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 398 FTNKDSLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 228
           FT+K  + + + C+ +  +   +  K    ++T+    S +REV+ K +PD     IE
Sbjct: 38  FTSKALVQRVRPCFQEFLSSALSSEKLFVAVVTQSPQVSLVREVLEKALPDCDTTKIE 95


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 509 LTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFC 405
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


>SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)
          Length = 302

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 431 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 252
           DGY ++V   GF     L Q+   Y QH   R    +    + + +  S  R+++ KL+P
Sbjct: 242 DGYCVQVGQTGFR---CLCQQTGYYGQHCHERCPSSEEVSKVFKTMWKSNNRKLMRKLLP 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,385
Number of Sequences: 59808
Number of extensions: 296788
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)