Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E10f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   219   2e-57
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   219   2e-57
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   219   2e-57
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   213   9e-56
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   199   2e-51
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   126   2e-29
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    29   5.1  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  219 bits (535), Expect = 2e-57
 Identities = 107/165 (64%), Positives = 126/165 (76%), Gaps = 5/165 (3%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           HGMDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +Q
Sbjct: 104 HGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQ 163

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           VR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+
Sbjct: 164 VRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKK 223

Query: 161 PRFEISKLMELHXXXXXXXXXXGDKSE-----RPEGYEPPVQESV 42
           PRF++SKL+ELH             SE     RPEGYEPPVQE+V
Sbjct: 224 PRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  219 bits (535), Expect = 2e-57
 Identities = 107/165 (64%), Positives = 126/165 (76%), Gaps = 5/165 (3%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           HGMDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +Q
Sbjct: 54  HGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQ 113

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           VR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+
Sbjct: 114 VRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKK 173

Query: 161 PRFEISKLMELHXXXXXXXXXXGDKSE-----RPEGYEPPVQESV 42
           PRF++SKL+ELH             SE     RPEGYEPPVQE+V
Sbjct: 174 PRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 218


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  219 bits (535), Expect = 2e-57
 Identities = 107/165 (64%), Positives = 126/165 (76%), Gaps = 5/165 (3%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           HGMDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +Q
Sbjct: 104 HGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQ 163

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           VR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+
Sbjct: 164 VRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKK 223

Query: 161 PRFEISKLMELHXXXXXXXXXXGDKSE-----RPEGYEPPVQESV 42
           PRF++SKL+ELH             SE     RPEGYEPPVQE+V
Sbjct: 224 PRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  213 bits (521), Expect = 9e-56
 Identities = 105/163 (64%), Positives = 124/163 (76%), Gaps = 5/163 (3%)
 Frame = -1

Query: 515 MDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 336
           MDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 335 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 156
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PR
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120

Query: 155 FEISKLMELHXXXXXXXXXXGDKSE-----RPEGYEPPVQESV 42
           F++SKL+ELH             SE     RPEGYEPPVQE+V
Sbjct: 121 FDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 163


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  199 bits (486), Expect = 2e-51
 Identities = 102/166 (61%), Positives = 122/166 (73%), Gaps = 6/166 (3%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           HGMDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYA  +Q
Sbjct: 105 HGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQ 164

Query: 341 VRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 165
           VR IR  +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK
Sbjct: 165 VRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 224

Query: 164 RPRFEISKLMELHXXXXXXXXXXGDKSE-RPEG----YEPPVQESV 42
           +PRF++SKL+ELH             SE  P+      +PPVQESV
Sbjct: 225 KPRFDVSKLLELHGDGGGKSVEAVVSSEGAPKSTALKVKPPVQESV 270


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  126 bits (303), Expect = 2e-29
 Identities = 56/85 (65%), Positives = 70/85 (82%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           HGMDLTTDK R M KKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +Q
Sbjct: 104 HGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQ 163

Query: 341 VRAIRKKMCEIITRDVTNSELREVV 267
           VR IR +M +IIT +V+ ++L++++
Sbjct: 164 VRKIRARMTDIITNEVSGADLKQLL 188


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 183 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 335
           + AN+      M  LLD++  GV   L+H   E     V    +   ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,559,877
Number of Sequences: 53049
Number of extensions: 438539
Number of successful extensions: 1221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)