Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   170   4e-43
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  170 bits (414), Expect = 4e-43
 Identities = 83/160 (51%), Positives = 110/160 (68%)
 Frame = -1

Query: 521 HGMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 342
           H M +T DKL  + KKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y + ++
Sbjct: 99  HAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSK 158

Query: 341 VRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 162
           +R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KR
Sbjct: 159 IRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKR 218

Query: 161 PRFEISKLMELHXXXXXXXXXXGDKSERPEGYEPPVQESV 42
           P+ ++ +L +LH          G+K +RP+ YEPPVQ+ V
Sbjct: 219 PKVDLGRLHDLH-GDSITVGADGEKVDRPDDYEPPVQQEV 257


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 137 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 277
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 395 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 228
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 320
           ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = -1

Query: 353 QHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVK 174
           QH Q RA++K M E +   V N ++ E+ N      + K +E        + + C    K
Sbjct: 211 QHLQNRAVQKTMIEQLESAVRNQDVMEMGN-----VVKKGLENGTLSEIQIEEFC----K 261

Query: 173 VLKRPRFEISKLME 132
              RP F I + ++
Sbjct: 262 HTTRPNFSILQFVQ 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,052
Number of Sequences: 27780
Number of extensions: 213890
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)