Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           177   4e-45
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   171   2e-43
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   0.82 
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   1.1  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   7.7  
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    27   7.7  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  177 bits (431), Expect = 4e-45
 Identities = 77/131 (58%), Positives = 107/131 (81%)
 Frame = -1

Query: 518 GMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 339
           GMD TTDKLR + KKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCYAQ +Q+
Sbjct: 102 GMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQI 161

Query: 338 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 159
           R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 162 RQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221

Query: 158 RFEISKLMELH 126
           +F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  171 bits (417), Expect = 2e-43
 Identities = 74/131 (56%), Positives = 106/131 (80%)
 Frame = -1

Query: 518 GMDLTTDKLRWMXKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 339
           GMD TTDKLR + KKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCYAQ +Q+
Sbjct: 102 GMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQI 161

Query: 338 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 159
           R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 162 RQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221

Query: 158 RFEISKLMELH 126
           +F++ KLM++H
Sbjct: 222 KFDLGKLMDVH 232


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 306 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 470
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 192 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 359
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S + +
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEINL 480


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 249 LHCQGHREGLPW 214
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 210 DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSD 341
           D    +LD+LGN V+    H  P   V+D+  +    ++  CSD
Sbjct: 78  DGTVRILDLLGNQVKEFRAHTAP---VNDINFDTEGEYIGSCSD 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,662
Number of Sequences: 28952
Number of extensions: 201522
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)