Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E08f
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   1.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   1.9  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   5.8  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 437 FYIVPQEGKWIIIEK*SWEQPI*ILDFM*AASSHNKVSK 321
           F  +P   +W I+   SW + + +L F+ +   H +VS+
Sbjct: 122 FSQMPSSSQWSIVRNSSWYENLKLLKFLSSVGPHVRVSQ 160


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 169 NIYQHFGFKIINYLETFF 222
           NI+ HFG ++++YL + F
Sbjct: 103 NIFSHFGTRLLHYLRSLF 120


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 97  LFVTMQISEGI--CSSRCINPEKHRINIYQHFGFKIINYLETF 219
           LF+ + +SE I   SS   N  +HR+ I  HF  K +N +E +
Sbjct: 284 LFIHLFMSENIPNLSSIRANWPQHRLFINLHFNQKDLNLIEVW 326


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 173 IFILCFSGLIQRDEQIPSEICMVTNNIRIIFY 78
           + ILC+SG  Q D  I ++  +     R IFY
Sbjct: 814 VAILCYSGYNQEDSIIMNQASIDRGLFRSIFY 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,129
Number of Sequences: 5004
Number of extensions: 44202
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)