Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E08f
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    30   0.96 
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 90  NYLLPQTLTSIRSRKEIVAFLDKDSGCESY 1
           NY+ PQ+L  I +R +I A+L+    C  Y
Sbjct: 292 NYIAPQSLNIISARDDIHAYLNSPDRCPKY 321


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 304 PIYSNDSNCFIEL*QKIPTISFTECHHRKMFLNS**F*NRNVDKYLFY 161
           P+Y ++S  ++E+ + +      ECHHR  F +S    N ++D+ + Y
Sbjct: 188 PLYGSESK-WLEVVEYVEHYRLLECHHRSRF-HSKWVINMDIDERVIY 233


>Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical
           protein ZK637.3 protein.
          Length = 599

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 100 FVTMQISEGICSSRCINPEKHRI 168
           F+ +Q+  G+CS RC NP+ + I
Sbjct: 425 FLKVQVFTGVCSDRC-NPKSNEI 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,554
Number of Sequences: 27780
Number of extensions: 234353
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)