Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E08f
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              28   0.058
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              28   0.058
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   2.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   2.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   2.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.8  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 136 SRCINPEKHRINIYQHFGFKIINYLETFFGDD-IR*KILSEFSVITR*NNYYH*NKLARE 312
           + CI  + + ++   +F   I+  L + + D+ +  K+++E SVI+  N Y   NKL + 
Sbjct: 63  NECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKC 122

Query: 313 FGDLLTL 333
           FG   T+
Sbjct: 123 FGKYKTM 129


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 136 SRCINPEKHRINIYQHFGFKIINYLETFFGDD-IR*KILSEFSVITR*NNYYH*NKLARE 312
           + CI  + + ++   +F   I+  L + + D+ +  K+++E SVI+  N Y   NKL + 
Sbjct: 63  NECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKC 122

Query: 313 FGDLLTL 333
           FG   T+
Sbjct: 123 FGKYKTM 129


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           +I +N+D+ FHR+SS
Sbjct: 212 IIYQNADDSFHRLSS 226


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           +I +NSD+ FHR++S
Sbjct: 215 IIYQNSDDSFHRLTS 229


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 423 TRGQMDNYREMKLGTTNLNFG 361
           TRG    YR ++L T N ++G
Sbjct: 48  TRGGNKKYRALRLDTGNFSWG 68


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++ +NSD  FHR++S
Sbjct: 215 IVYQNSDESFHRLTS 229


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++ +NSD+ FHR++S
Sbjct: 217 IMYQNSDDSFHRLTS 231


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++  NSD+ FHR++S
Sbjct: 214 IVYHNSDDSFHRLTS 228


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++  NSD+ FHR++S
Sbjct: 214 IVYHNSDDSFHRLTS 228


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++  NSD+ FHR++S
Sbjct: 214 IVYHNSDDSFHRLTS 228


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 269 VITENSDNIFHRMSS 225
           ++ +N+D+ FHR++S
Sbjct: 212 IVYQNADDSFHRLTS 226


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 344  SSHNKVSKSPNS 309
            +SHNK+  SP+S
Sbjct: 1476 TSHNKIGSSPSS 1487


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 344  SSHNKVSKSPNS 309
            +SHNK+  SP+S
Sbjct: 1472 TSHNKIGSSPSS 1483


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 350 AASSHNKVSKSPNSLAN 300
           AA   NK+ K+PN +A+
Sbjct: 569 AAERLNKIGKNPNLVAH 585


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 350 AASSHNKVSKSPNSLAN 300
           AA   NK+ K+PN +A+
Sbjct: 537 AAERLNKIGKNPNLVAH 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,933
Number of Sequences: 438
Number of extensions: 3350
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)