Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E08f
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16390.1 68414.m01960 organic cation transporter-related low ...    29   2.1  
At1g46984.1 68414.m05220 F-box protein-related contains weak hit...    27   6.4  
At5g02480.1 68418.m00181 expressed protein p                           27   8.5  
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    27   8.5  

>At1g16390.1 68414.m01960 organic cation transporter-related low
           similarity to Organic cation/carnitine transporter 2
           (Solute carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) from {Homo
           sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 518

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 402 YREMKLGTTNLNFGLYVGCLF 340
           Y  M L  TNLNF LY+G +F
Sbjct: 340 YYGMPLALTNLNFNLYLGVVF 360


>At1g46984.1 68414.m05220 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 370

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 448 ICENSILYHKRANG*L*RNEVGNNQFKF 365
           IC N +LY++  N  + R +V + +F+F
Sbjct: 220 ICINGVLYYRNTNAMIVRFDVRSEEFRF 247


>At5g02480.1 68418.m00181 expressed protein p
          Length = 508

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 264 NRKFRQYLSPNVITEKCF*IVNDFET 187
           N+K +++LSP    E+C   VN+ ET
Sbjct: 330 NKKRKEFLSPGSSEEECCLTVNNIET 355


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 85  IILMLFVTMQISEGIC-SSRCINPEKHR 165
           IIL+L +T+ IS  IC   RC+N   HR
Sbjct: 31  IILILLMTLLISVSICFLLRCLNRCSHR 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,844
Number of Sequences: 28952
Number of extensions: 209847
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)